NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16412.1 Public Mus musculus 2 Or4b1b 23 108 98 CCDS HistoryNCBI Gene:258982Re-query CCDS DB by CCDS ID:16412.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16412.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099750.1 ENSMUSP00000097339.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099750.1Link to Ensembl Protein Viewer:ENSMUSP00000097339.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099750Re-query CCDS DB by Protein ID:ENSMUSP00000097339
Original member Current member EBI ENSMUST00000117141.3 ENSMUSP00000150745.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117141.3Link to Ensembl Protein Viewer:ENSMUSP00000150745.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117141Re-query CCDS DB by Protein ID:ENSMUSP00000150745
Original member Current member NCBI NM_146980.1 NP_667191.1 Accepted alive Link to Nucleotide Sequence:NM_146980.1Link to Protein Sequence:NP_667191.1Re-query CCDS DB by Nucleotide ID:NM_146980Re-query CCDS DB by Protein ID:NP_667191Link to BLAST:NP_667191.1

Chromosomal Locations for CCDS 16412.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90281647 90282573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCCAACAAAAATAATATAACCGAGTTAATTTTCACTGGCCTTTTCCAGGATCCAGAGGTTCAGAAGG
TGTGCTTTGTGCTGTTCCTTCCTGTGTACCTGGCCACATTGCTGGGCAACAGTCTTATTGTTGTGGCAGT
CAGCATCAGTAAGACTTTACATTCTCCCATGTACTTCTTCCTCAGTTCCTTGTCCCTGGTGGAGATCTGT
TACTCCTCTACAATTGTCCCTAAGTTCATCACTGACTTACTTGTTAAGGTTAAAACCATCTCCCTGAAGG
GCTGTCTGGCTCAGATATTCTTCTCCCATTTCTTGGGGGTTGCTGAGATTCTCCTGCTTGTGGTGATGGC
TTATGACCGCTATGTGGCCATCTGCAAACCTCTTCATTACATGAACATCATGAGTCGTCAAGTGTGTCAC
ATGTTGGTGGGTGGCTCCTGGCTGGGGGGCCTCATTCACTCCATAATCCAGATCATCATCACTATTCCAT
TGCCCTTCTGTGGTCCCAATGTGATTGACCACTACTTCTGTGACCTGCAGCCATTATTTAAGCTTGCCTG
CACTGACACCTTTATGGAAGGTGTTGTTGTGATGGCCAACAGTGGTTTAATCTCTATAATCTCTCTTTTC
ATCTTGGTGTCCTCTTATGCTATCATTCTAATCAGCTTGAGGAAGCATTCTGCAGAGGGAAGACGCAAGG
CCCTCTCCACATGTGCCTCTCACATCACAGTGGTCATCCTGTTCTTTGGACCTGCCACCTTCCTTTATCT
GCGACCATCCTCCAGCTTCACTGAAGATAAGCTTGTGGCTGTGTTCTACACAGTCATCACCCCCATGCTG
AACCCTATCATCTATACTCTCAGAAATGCAGAGGTGAAAAATGCCATGAAGAAATTGTGGGGCAAAAGGA
ACCCAGAGACAGAGTGA

Translation (308 aa):
MANKNNITELIFTGLFQDPEVQKVCFVLFLPVYLATLLGNSLIVVAVSISKTLHSPMYFFLSSLSLVEIC
YSSTIVPKFITDLLVKVKTISLKGCLAQIFFSHFLGVAEILLLVVMAYDRYVAICKPLHYMNIMSRQVCH
MLVGGSWLGGLIHSIIQIIITIPLPFCGPNVIDHYFCDLQPLFKLACTDTFMEGVVVMANSGLISIISLF
ILVSSYAIILISLRKHSAEGRRKALSTCASHITVVILFFGPATFLYLRPSSSFTEDKLVAVFYTVITPML
NPIIYTLRNAEVKNAMKKLWGKRNPETE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH