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Report for CCDS16215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16215.1 Public Mus musculus 2 Or8k16 23 108 98 CCDS HistoryNCBI Gene:258866Re-query CCDS DB by CCDS ID:16215.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054868.1 ENSMUSP00000061191.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054868.1Link to Ensembl Protein Viewer:ENSMUSP00000061191.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000054868Re-query CCDS DB by Protein ID:ENSMUSP00000061191
Original member Current member NCBI NM_146866.1 NP_667077.1 Accepted alive Link to Nucleotide Sequence:NM_146866.1Link to Protein Sequence:NP_667077.1Re-query CCDS DB by Nucleotide ID:NM_146866Re-query CCDS DB by Protein ID:NP_667077Link to BLAST:NP_667077.1

Chromosomal Locations for CCDS 16215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85689431 85690372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGGGCAACAGAATACAACATCACTGCCTGGGTTCATCTTGATGGGAATCACACAGAGCACTGAGCTTC
AGCTTCCTTTGTTTGGGGTCTTCTTCATCATCTATGCAGTCACAGTCATGGGCAACCTGGGCATGATCAT
TTTGACCAAGCTGGACTCTCGCCTACAAACCCCTATGTACTTTTTCATCAGACACCTGGCTTTCATTGAT
CTTGGAAATTCCACTGTCATCTGTCCCAAGATGCTGATGGATTTTGTTATGGATGAAAAAAACATTTCTT
TTTATGCATGTGCCACACAGATGTCATTCTTTGTTTTGTTCATTATCAGTGAACTCTTTATCTTGTCCTC
AATGGCCTATGACTGCTATGTGGCCATCTGCAACCCTCTGCTCTACAGTGTGATCATGTCTCAGAGACTT
TGCCATGTGCTTGTGGACATCCCATATCTCTACAGCACCTTCCAGGCTCTGCTATTCACCAGTAAAATTT
TCACATTAACTTTCTGTGGCTCTAACATCATCAGCCATTTCTACTGTGATGCTGTTTACTTGTTACCCAC
CTTGTGTTCAAATGCTGAAGAAATACAACTGCTGATCATATTATTTTCAGCATTGAATTTGCTCTCCTCT
CTTCTGATAGTCCTTGGATTATATGTCCTGATTCTGATAGCCATATGTCGAATGCATTCTGCAGAAGGCA
GAAGAAAAGCGTTCTCTACATGTGGGTCTCATCTGACAGTGGTTGTGGTGTTTTATGGTACTCTACTGTT
TATGTACTTGCAACCAAAATCTACTGACTCCTTAGAGAATGATAAAATAACCTCTGTGTTTTATACTTTA
GTGATCCCCATGATTAACCCCTTGATATACAGTTTAAGGAACAAAGAGGTAAAAAATGCTTTCAACAGGG
CATTAAAGAATCCATTTAAAATTAATACTTAA

Translation (313 aa):
MGQQNTTSLPGFILMGITQSTELQLPLFGVFFIIYAVTVMGNLGMIILTKLDSRLQTPMYFFIRHLAFID
LGNSTVICPKMLMDFVMDEKNISFYACATQMSFFVLFIISELFILSSMAYDCYVAICNPLLYSVIMSQRL
CHVLVDIPYLYSTFQALLFTSKIFTLTFCGSNIISHFYCDAVYLLPTLCSNAEEIQLLIILFSALNLLSS
LLIVLGLYVLILIAICRMHSAEGRRKAFSTCGSHLTVVVVFYGTLLFMYLQPKSTDSLENDKITSVFYTL
VIPMINPLIYSLRNKEVKNAFNRALKNPFKINT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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