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Report for CCDS28752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28752.1 Public Mus musculus 17 Or12d17 23 108 98 CCDS HistoryNCBI Gene:258832Re-query CCDS DB by CCDS ID:28752.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031086.4 ENSMUSP00000031086.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031086.4Link to Ensembl Protein Viewer:ENSMUSP00000031086.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031086Re-query CCDS DB by Protein ID:ENSMUSP00000031086
Original member Current member EBI ENSMUST00000217602.1 ENSMUSP00000150044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217602.1Link to Ensembl Protein Viewer:ENSMUSP00000150044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217602Re-query CCDS DB by Protein ID:ENSMUSP00000150044
Original member Current member EBI ENSMUST00000214938.1 ENSMUSP00000150286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214938.1Link to Ensembl Protein Viewer:ENSMUSP00000150286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214938Re-query CCDS DB by Protein ID:ENSMUSP00000150286
Original member Current member EBI ENSMUST00000214668.1 ENSMUSP00000150326.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214668.1Link to Ensembl Protein Viewer:ENSMUSP00000150326.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214668Re-query CCDS DB by Protein ID:ENSMUSP00000150326
Original member Current member NCBI NM_146835.1 NP_667046.1 Accepted alive Link to Nucleotide Sequence:NM_146835.1Link to Protein Sequence:NP_667046.1Re-query CCDS DB by Nucleotide ID:NM_146835Re-query CCDS DB by Protein ID:NP_667046Link to BLAST:NP_667046.1

Chromosomal Locations for CCDS 28752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37466208 37467152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAGAACTCCACTTCAGTGGATGAGTTTCTCTTGCTTGGCCTGACCAGTGTTCAAAAGCTGCAGCCCA
TCATTTTTGTGATGTTTTTAACCATTTACTTACTGAATTTGGTTGGAAATGGAGTTATATTAATGATCGT
CACTCTGGAAAGAAGACTCCACTCCCCTATGTACTTCTTCCTAGGAAACCTTTCTTGCCTGGATATTTGT
TACTCATCGGTGACTCTTCCCAAGGTTCTCATCAACCTTCTCTCGAGGCGTAGGGCCATATCATTCCTAG
GCTGCATCACTCAGCTCTACTTCTTTCACTTTCTGGGAAGTACGGAGGCCATCTTGCTGGCTGTGATGGC
CTTTGACCGATTTGTGGCCATCTGCAGCCCACTTCGCTACACTGCTATCATGAATCCTCAGTTGTGCATC
CTGTTGGCTGCTACGGCCTGGTTCACAAGCTTCTTCTATGCTCTGCTGCATTCTGTCATGACTGCTCACT
TGAACTTTTGCCACTCTCACAAACTCAGTCATTTCTTCTGTGATGTCAAGCCCCTCTTAGAAGTGGCCTG
TGGCAATACAGTTCTCAACCAATGGCTTCTTTCTGTTGTCACAGGCAGTATATCCATGGGGGCCTTCCTC
CTCATACTCCTCTCCTATTTCTACATCATTGCCTTTCTTCTGTTCAAGAACAGGTCCTGCAGAATGCTTA
AGAAGGCTCTGTCTACCTGCACCTCTCACTTTATGGTGGTTTGTCTTTTCTATGGTCCTGTTGGTTTCAC
ATACATCCGCCCTGCCACAGCATCAGCCTCCTCCATGAGTGAGGATCGGGTGGTGGCCATCATCTACAGT
GCAGTCACCCCAGTGCTGAACCCACTGATATATACTCTAAGGAACAAAGAGGTGATGTTGGCTCTGAAAA
AGAACTTTGGGAAGAAGTTGTTTAAAGGCAACTAG

Translation (314 aa):
MENSTSVDEFLLLGLTSVQKLQPIIFVMFLTIYLLNLVGNGVILMIVTLERRLHSPMYFFLGNLSCLDIC
YSSVTLPKVLINLLSRRRAISFLGCITQLYFFHFLGSTEAILLAVMAFDRFVAICSPLRYTAIMNPQLCI
LLAATAWFTSFFYALLHSVMTAHLNFCHSHKLSHFFCDVKPLLEVACGNTVLNQWLLSVVTGSISMGAFL
LILLSYFYIIAFLLFKNRSCRMLKKALSTCTSHFMVVCLFYGPVGFTYIRPATASASSMSEDRVVAIIYS
AVTPVLNPLIYTLRNKEVMLALKKNFGKKLFKGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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