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Report for CCDS17948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17948.1 Public Mus musculus 4 Fam110b 23 108 98 CCDS HistoryNCBI Gene:242297Re-query CCDS DB by CCDS ID:17948.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054857.12 ENSMUSP00000062734.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054857.12Link to Ensembl Protein Viewer:ENSMUSP00000062734.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054857Re-query CCDS DB by Protein ID:ENSMUSP00000062734
Original member Current member EBI ENSMUST00000108380.1 ENSMUSP00000104017.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108380.1Link to Ensembl Protein Viewer:ENSMUSP00000104017.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108380Re-query CCDS DB by Protein ID:ENSMUSP00000104017
Original member Current member EBI ENSMUST00000171403.1 ENSMUSP00000127942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171403.1Link to Ensembl Protein Viewer:ENSMUSP00000127942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171403Re-query CCDS DB by Protein ID:ENSMUSP00000127942
Original member Current member NCBI NM_001355716.1 NP_001342645.1 Accepted alive Link to Nucleotide Sequence:NM_001355716.1Link to Protein Sequence:NP_001342645.1Re-query CCDS DB by Nucleotide ID:NM_001355716Re-query CCDS DB by Protein ID:NP_001342645Link to BLAST:NP_001342645.1
Original member Current member NCBI NM_173426.3 NP_775602.1 Accepted alive Link to Nucleotide Sequence:NM_173426.3Link to Protein Sequence:NP_775602.1Re-query CCDS DB by Nucleotide ID:NM_173426Re-query CCDS DB by Protein ID:NP_775602Link to BLAST:NP_775602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342645.1 366 Q8C739 366 100% 0 0
NP_775602.1 366 Q8C739 366 100% 0 0

Chromosomal Locations for CCDS 17948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 5798584 5799684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGCCCACGGAGACTCTACAGACAGGTAGCATGGTGAAGCCTGTCAGCCCCGCGGGCACCTTCACGTCGG
CGGTGCCCCTGCGCATCCTGAACAAAGGACCCGACTACTTCCGCAGGCAGGCTGAGCCCAACCCCAAGAG
ACTCAGTGCGGTAGAGCGGCTGGAGGCTGACAAGGCCAAATACGTCAAGAGCCAGGAGGTGATCAATGCC
AAGCAGGAGCCAGTGAAGCCGGCCGTGTTGGCCAAGCCCCCTGTGTGCCCAGGAACCAAGCGTGCACTGG
GCAGCCCCACTCTCAAGGTGTTCGGCAACCATGCCAAGACCGAGAGCGGTGTGCAACGTGAGACCCTCAA
GCTTGAGATCCTCAAGAACATCATCAACAGCTCAGAGGGGTCCAGTTCTGGCTCCGGCCACAAGCATAGC
TCCCGAAACTGGCCGCCTCACAGGGACACCACTGACCTGCACCGGCATTCCTTCGCAGAGTCGCTGAAGG
TGTACCCTACACCTGGCCATGGCAGCCCGCAGGAGAGCAGCTCCCACGTGAGCAGGAGGCTGCTGGAGCA
GTCCGCGGAGACCTTCCTGCACGTCTCACACAGCTCCTCAGACATCCGCAAAGTGACCAGTGTGAAGCCC
CTTAAAGCCATCCCCTGCAGCAGTTCAGCCCCTCCCCTGCCTCCCAAGCCCAAGGTGGCTGCCATGAAGT
CCCCCGAGGCTGACCAGGTGGAACCAGCCTGTGGGGTCAGCCGGAGACCTTCCCTTCAGCGGTCCAAGTC
AGACTTGAGTGACAGGTATTTCCGAGTAGATGCAGATGTGGAGAGGTTCTTCAACTACTGCGGACTTGAC
CCGGAAGAGCTGGAAAACCTTGGCATGGAGAACTTTGCAAGGGCTAATTCTGACATCATATCTCTCAACT
TCCGCAGCGCAAGCATGATCAGCTCAGACTGTGAACAGTCTCAGGACAGTAACAGTGACCTTAGAAATGA
TGACAGTGCCAATGACCGGGTGCCATATGGCATTTCTGCCATTGAAAGAAATGCTAGAATCATCAAGTGG
CTATATAGCATCAAACAAGCTAGAGAGTCACAGAAGGTGTCCCACGTGTAA

Translation (366 aa):
MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINA
KQEPVKPAVLAKPPVCPGTKRALGSPTLKVFGNHAKTESGVQRETLKLEILKNIINSSEGSSSGSGHKHS
SRNWPPHRDTTDLHRHSFAESLKVYPTPGHGSPQESSSHVSRRLLEQSAETFLHVSHSSSDIRKVTSVKP
LKAIPCSSSAPPLPPKPKVAAMKSPEADQVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLD
PEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKW
LYSIKQARESQKVSHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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