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Report for CCDS15380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15380.1 Public Mus musculus 1 Teddm1a 23 108 98 CCDS HistoryNCBI Gene:240819Re-query CCDS DB by CCDS ID:15380.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050660.5 ENSMUSP00000062098.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050660.5Link to Ensembl Protein Viewer:ENSMUSP00000062098.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000050660Re-query CCDS DB by Protein ID:ENSMUSP00000062098
Original member NCBI NM_178244.3 NP_839975.2 Updated not alive Link to Nucleotide Sequence:NM_178244.3Link to Protein Sequence:NP_839975.2Re-query CCDS DB by Nucleotide ID:NM_178244Re-query CCDS DB by Protein ID:NP_839975
Current member NCBI NM_178244.4 NP_839975.2 Accepted alive Link to Nucleotide Sequence:NM_178244.4Link to Protein Sequence:NP_839975.2Re-query CCDS DB by Nucleotide ID:NM_178244Re-query CCDS DB by Protein ID:NP_839975Link to BLAST:NP_839975.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_839975.2 305 Q810U2 305 99.3443% 0 2

Chromosomal Locations for CCDS 15380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153891792 153892709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGGAGACTTTATTGGCCATATATCTCCAGGCTTGTTTCTGGTCTTCTATGGTCTGTATCAAGCAGTAA
TAGTCTCCAGAGCTGTGATATTCAATGACTCTCTTCTGTATCCTTCCTACCTTTCCAAGAATAAGGGGAA
ATGGGCCCGGCTGTGGAAAATAGCCCATGCAGGCTGGTTGAAGGTTGTGATCGGCTCCCTCTTGATCGTT
TATGAGATCAGTTGTGTTAAAGAAGGGCTGACATTAATGACCAAAGGGGTGCCACCAAGGTTTATGTACC
CCAAGGAGTGGCAGCACCTCACCATGTTCTTCCTTCTCACCCTTGATGGCTGTGTAGAAATGGTGAGCAA
GAACATGCTACGGCAGAGGTGTGTGCTCCTAGAAAGAGGTGCCACGGTCCTGGGTGTCTACGTGCTGCTC
CTGCTGCTAGTGTCTCACGTTAAAGAATCATCTGGGGTGGAGCTGCAGGTTCACTCTCTCCTCATCTTGG
TGGTGTTCCTGCTGATGCTGGTGTTGACGGCAGAGCTCTGGGCTCCTGAGATGTTTCACCTCTGGATGAT
AGAGACCTTCCTGATCCTGATAATGGGCTCGTGGCTGATTCAGGCAGCCTTCATTCTCTTTAGACCAGTC
TCTGGCTTCCCATGGGAGGATGATGACATCAGTGACATCATGTTTGTCACCACCTTCTTCTGCTGGCATG
TGATGATCAATGCCTTATGCATGTTGGGAATCTATGGTGTCTCTTCCTTTTGGCACCGTTGTTACAGTCC
CAGCTTGAGGCTGATGGGGTCCAAGGAAGCGCTGTATCAGGAGAGCTCTTCAGGAACCTTCTACAAGCTG
CTGCAGGAGGCAGAGCAGCAGGACAAAGATGACCAGGCTCCTCTCCTTTCAAAGATCTCTCCCTGTGACC
GGGCCTAG

Translation (305 aa):
MGDFIGHISPGLFLVFYGLYQAVIVSRAVIFNDSLLYPSYLSKNKGKWARLWKIAHAGWLKVVIGSLLIV
YEISCVKEGLTLMTKGVPPRFMYPKEWQHLTMFFLLTLDGCVEMVSKNMLRQRCVLLERGATVLGVYVLL
LLLVSHVKESSGVELQVHSLLILVVFLLMLVLTAELWAPEMFHLWMIETFLILIMGSWLIQAAFILFRPV
SGFPWEDDDISDIMFVTTFFCWHVMINALCMLGIYGVSSFWHRCYSPSLRLMGSKEALYQESSSGTFYKL
LQEAEQQDKDDQAPLLSKISPCDRA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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