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Report for CCDS27012.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27012.2 Public Mus musculus 14 Tlr11 23 108 98 CCDS HistoryNCBI Gene:239081Re-query CCDS DB by CCDS ID:27012.2See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27012.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27012.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000185091.1 ENSMUSP00000138814.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185091.1Link to Ensembl Protein Viewer:ENSMUSP00000138814.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185091Re-query CCDS DB by Protein ID:ENSMUSP00000138814
Original member Current member NCBI NM_205819.3 NP_991388.2 Accepted alive Link to Nucleotide Sequence:NM_205819.3Link to Protein Sequence:NP_991388.2Re-query CCDS DB by Nucleotide ID:NM_205819Re-query CCDS DB by Protein ID:NP_991388Link to BLAST:NP_991388.2

Chromosomal Locations for CCDS 27012.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50358016 50358025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50360569 50363354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGCTCAAAGAATCGATGCCAAGGATGGAAAGACATCAGTTCTGCTCTGTTCTCCTCATTCTGATACTAT
TGACTCTGGTGAGCCTTACCTTGACTGGCTGGGCATGGACCATCCCTGATTGCATCATAGCAGACAGTTT
GTTATTTCCTAACCTTTCCTACTACATCCCATTCTGTACCTCGGCCCCAGGACTGCACCTTTTGGCATCT
TGCTCTAATGTTAAAAACTTAAATCAGACCCTAAAAAGAGTGCCCAGAAATACAGAGGTACTCTGCCTCC
AGGGCATGGTTCCTACTCTGCCAGCTAAGGCCTTTATTCGCTTCCACTCCCTACAGCTTCTAAGGCTGCA
ATTGCGTACAACCAGTGTCACATCTAGGACTTTTCAAGGACTGGACCAGCTACAATACCTTTTTTTTGAT
CATCATGCTCCCTGTTGCCTAAGTTTGTTCCTCTCTCCAAATTGTTTTGAGTCTCTTAGATCCCTTAGTA
GTCTTTCCTTTCAAGGATATTGCCTGACTTATAGCCAAAGCATCTACTTGCCAACTAGTCTTAGGCATCT
AACTCTGAGGAATAGCTGTCTAACAAAGTTTCAGGACCTTCAAAGGCTCTTCCCAGACCTTCTGCTGAGT
ACCTCCTCTACACCCAATATCAAACCAGGGGCACCCTTTTTAGAGACGCTGGATTTATCTTACAACCTTC
AGCTGAAACAGGCAGGTGTCAGAGACTTGTATGGCCTCACACTCCATTCCCTAATATTGGATGGTACCCC
ACTAAAAGCACTTGATCTCACAGACTCAGGACTGCTCCACTTGCATTTCCTCTCCCTTGTGGGAACAGGA
ATAGAAAAAGTGCCTGCAAGTTTGACTGGCTACTCTGAGCTTCGTGCACTTGACCTTGGGAAAAACCAAA
TCCAAAACATCTTGGAAAATGGAGAAATCCCAGGTTATAAAGCCCTGGAATTCCTTAGCCTTCATGATAA
CCATCTGCAAACACTTCCTACCAGGTTTCTACATACTCTACCCCAGCTTCAGAAGCTCAACCTATCTATG
AATAAGCTTGGCCCAATCTTGGAGCTTCCAGAAGGACTCTTTAGCACAAACTTAAAAGTGCTAGATCTAT
CCTATAATCAACTCTGTGATGTACCCCATGGGGCTTTATCCCTTTTGTCACAGCTCCAGGAGCTCTGGTT
GAGTGGCAATAACATCTCTAGTTTATCCAATGAAAGCCTGCAGGGACTGAGGCAGCTGAGGACACTAGAC
TTAAGTTGGAATCAAATTAAAGTACTCAAACCAGGCTGGCTCTCTCATCTTCCTGCTCTGACTACCTTGA
ACCTTCTGGGCACCTACTTAGAATATATCTTAGGCATACAACTTCAGGGTCCCAAGATGCTAAGGCATTT
ACAACTGGGTTCTTATCCAATACTGGACATATATCCTCCCTGGCCCCCAACACTCCTTAGCTTAGAAATA
CAAGCAGAATCATGTATTCAGTTTATGATTCACAGTGGACAGCCATTCTTATTCTTGGAGAACCTTACCT
TAGAGACTTCCATTCTATTACTAAAACCAGACAACATCACAATTCATTTTCCCTCCCTGCGTCGCCTCAC
CTTGCGTGGCTACAGCTTCATCTTCTCAACCAGTCAACTTCAGAGATTCTTCCCACAACAGCTTCCTCTT
CTGGAGCACTTCTTTATCTGGTGTGAAAACAGCTATGCAGTAGACCTCTATCTATTTGGGATGCCCAGGC
TACGTGTGCTAGAGCTGGGGTACCTTAACTTTTTCTATGAGTCAAGTACTATGAAGCTAGAGATGCTATT
GAAGGAGGTACCTCAGTTACAGGTACTGGCATTGAGCCACCTGAATCTCAGGAACCTCTCTGTGTCCAGC
TTTAAGAGCTTGCAGGACCTCAAACTGCTGCTCTTCAACTCTGAAAGGGCGCTGGAGATGAACAGCAACC
TCCAGGAGTTTATTCCTCAGATGCCTCAGTACGTTTACTTCTCTGATGTCACCTTTACTTGCCAGTGTGA
AGCTTCCTGGCTGGAGTCTTGGGCTACACGGGCCCCAAACACATTTGTTTATGGGCTGGAAAAATCCATT
TGCATAGCTAATGCCTCAGACTACTCCAAAACTCTACTATTCTCTTTCCTTGCTACTAATTGTCCACACG
GTACTGAGTTTTGGGGCTTTCTCACCAGTTTCATTCTGCTGCTTCTGTTGATTATCCTTCCTCTGATTAG
CTGTCCTAAATGGTCCTGGCTTCATCACCTCTGGACACTCTTTCATACTTGTTGGTGGAAATTATGTGGA
CATAGACTCAGAGGCCAATTCAACTATGATGTCTTTATATCCTATTGTGAGGAGGATCAAGCTTGGGTGC
TGGAAGAACTGGTTCCAGTTCTGGAGAAAGCCCCTCCTGAAGGTGAAGGCTTGAGGTTGTGCCTGCCTGC
CAGGGACTTTGGGATTGGAAATGACAGGATGGAATCCATGATTGCCAGCATGGGCAAAAGCAGAGCCACC
CTCTGTGTGCTCACAGGACAGGCCTTAGCAAGTCCCTGGTGCAATCTAGAGTTACGACTGGCCACTTACC
ACTTGGTAGCCAGGCCTGGGACCACTCATCTCCTGCTGTTGTTTCTGGAGCCCCTTGATAGGCAGAGGCT
CCATAGTTACCATCGCCTATCCCGTTGGCTCCAGAAGGAGGACTATTTTGATTTGTCCCAAGGGAAAGTG
GAGTGGAACTCTTTCTGTGAGCAACTGAAGAGACGGCTCAGCAAAGCTGGACAAGAAAGAGATTAA

Translation (931 aa):
MLKESMPRMERHQFCSVLLILILLTLVSLTLTGWAWTIPDCIIADSLLFPNLSYYIPFCTSAPGLHLLAS
CSNVKNLNQTLKRVPRNTEVLCLQGMVPTLPAKAFIRFHSLQLLRLQLRTTSVTSRTFQGLDQLQYLFFD
HHAPCCLSLFLSPNCFESLRSLSSLSFQGYCLTYSQSIYLPTSLRHLTLRNSCLTKFQDLQRLFPDLLLS
TSSTPNIKPGAPFLETLDLSYNLQLKQAGVRDLYGLTLHSLILDGTPLKALDLTDSGLLHLHFLSLVGTG
IEKVPASLTGYSELRALDLGKNQIQNILENGEIPGYKALEFLSLHDNHLQTLPTRFLHTLPQLQKLNLSM
NKLGPILELPEGLFSTNLKVLDLSYNQLCDVPHGALSLLSQLQELWLSGNNISSLSNESLQGLRQLRTLD
LSWNQIKVLKPGWLSHLPALTTLNLLGTYLEYILGIQLQGPKMLRHLQLGSYPILDIYPPWPPTLLSLEI
QAESCIQFMIHSGQPFLFLENLTLETSILLLKPDNITIHFPSLRRLTLRGYSFIFSTSQLQRFFPQQLPL
LEHFFIWCENSYAVDLYLFGMPRLRVLELGYLNFFYESSTMKLEMLLKEVPQLQVLALSHLNLRNLSVSS
FKSLQDLKLLLFNSERALEMNSNLQEFIPQMPQYVYFSDVTFTCQCEASWLESWATRAPNTFVYGLEKSI
CIANASDYSKTLLFSFLATNCPHGTEFWGFLTSFILLLLLIILPLISCPKWSWLHHLWTLFHTCWWKLCG
HRLRGQFNYDVFISYCEEDQAWVLEELVPVLEKAPPEGEGLRLCLPARDFGIGNDRMESMIASMGKSRAT
LCVLTGQALASPWCNLELRLATYHLVARPGTTHLLLLFLEPLDRQRLHSYHRLSRWLQKEDYFDLSQGKV
EWNSFCEQLKRRLSKAGQERD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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