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Report for CCDS26149.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26149.1 Public Mus musculus 12 Serpina3f 23 108 98 CCDS HistoryNCBI Gene:238393Re-query CCDS DB by CCDS ID:26149.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26149.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101080.1 ENSMUSP00000098641.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101080.1Link to Ensembl Protein Viewer:ENSMUSP00000098641.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101080Re-query CCDS DB by Protein ID:ENSMUSP00000098641
Original member Current member EBI ENSMUST00000121337.7 ENSMUSP00000113945.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121337.7Link to Ensembl Protein Viewer:ENSMUSP00000113945.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121337Re-query CCDS DB by Protein ID:ENSMUSP00000113945
Original member Current member EBI ENSMUST00000167049.7 ENSMUSP00000126520.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167049.7Link to Ensembl Protein Viewer:ENSMUSP00000126520.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167049Re-query CCDS DB by Protein ID:ENSMUSP00000126520
Original member Current member NCBI NM_001033335.3 NP_001028507.2 Accepted alive Link to Nucleotide Sequence:NM_001033335.3Link to Protein Sequence:NP_001028507.2Re-query CCDS DB by Nucleotide ID:NM_001033335Re-query CCDS DB by Protein ID:NP_001028507Link to BLAST:NP_001028507.2
Original member Current member NCBI NM_001168294.1 NP_001161766.1 Accepted alive Link to Nucleotide Sequence:NM_001168294.1Link to Protein Sequence:NP_001161766.1Re-query CCDS DB by Nucleotide ID:NM_001168294Re-query CCDS DB by Protein ID:NP_001161766Link to BLAST:NP_001161766.1
Original member Current member NCBI NM_001168295.1 NP_001161767.1 Accepted alive Link to Nucleotide Sequence:NM_001168295.1Link to Protein Sequence:NP_001161767.1Re-query CCDS DB by Nucleotide ID:NM_001168295Re-query CCDS DB by Protein ID:NP_001161767Link to BLAST:NP_001161767.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028507.2 445 Q80X76 445 100% 0 0
NP_001161766.1 445 Q80X76 445 100% 0 0
NP_001161767.1 445 Q80X76 445 100% 0 0

Chromosomal Locations for CCDS 26149.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104216881 104217487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104218206 104218479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104219419 104219569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104220209 104220514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCTGGTGTCTCCCCTGCTGTCTTTGGCTGCCCAGATGTCACCCTGGGAAGGAACACTGCAGTCCGTG
AAGTCCAAGAAAATATCACATCAGTGGACAGTTTAACACTGGCCTCCAGCAACACTGACTTTGCCTTCAG
CCTCTACAAGGAGCTGGTTTTGAAGAATCCAGATGAAAATGTTGTCTTCTCCCCATTCAGCATCTGCACT
GCCTTGGCCCTGCTGTCCCTGGGAGCAAAGAGCAACACCCTGAAGGAAATCCTAGAAGGTCTCAAGTTCA
ACCTCACAGAGACCCCTGAACCAGACATCCACCAGGGCTTTAGGTACTTGCTAGACCTTCTCAGTCAGCC
AGGGAACCAGGTACAGATCAGCACAGGCAGTGCCCTGTTTATTGAAAAGCACCTGCAGATCCTGGCAGAG
TTCAAGGAGAAAGCAAGGGCTCTGTACCAGGCTGAGGCCTTCACAGCAGATTTCCAGCAGCCTCTCGAGG
CCACAAAGCTCATCAATGACTATGTGAGCAATCACACCCAGGGGAAGATCAAGGAACTCATTTCAGACCT
GGATAAAAGGACATTGATGGTGCTGGTGAATTACATCTACTTTAAAGGCAAATGGGAGATGCCCTTTGAT
CCGGATGATACATGTAAGTCTGAGTTCTACTTGGATGAGAATAGGTCTGTGAAGGTGCCCATGATGAAAA
TTAATAACCTGACGACACCCTACTTCCGGGATGAGGAGCTGTCCTGCACTGTGGTGGAGCTGAAGTACAC
AGGAAATGCCAGTGCCATGTTCATCCTCCCGGACCAGGGCAAGATGCAGCAGGTGGAAGCCAGCTTGCAA
CCAGAGACCCTGAGGAATTGGAAGGACTCTCTGAAGCCCAGGTTGATAAATGAGCTCTGCCTGCCCAAGT
TCTCCATCTCCACCGACTACAGCCTGGAGCACATCCTTCCTGAGCTGGGCATCAGGGAGCTCTTCTCCAC
CCAGGCTGACCTGTCTGCAATCACAGGAACCAAGGATCTGAGAACTTCTCAGGTGGTCCACAAGGCTGTG
CTGGATGTGGCTGAGACAGGCACAGAAGCAGCTGCTGGCACAGGATATCAAAATCTCCAATGTTGTCAAG
GTGTAATCTACTCTATGAAAATATATTTCGACAGGCCATTCCTGATGATTATCTCTGACACAAACACTCA
TATTGCCCTCTTTATGGCAAAAGTTTCAAATCCAGAGAGTGATGAGAACTTCCTAAATGTGGAGTATGCT
TTTCCCCAAGTGCTGGAAATTATGCCTGAATATAGGTCTGTCTGCACATGTTGCCTTCCATGTCTGACTA
GACAGTGA

Translation (445 aa):
MAGVSPAVFGCPDVTLGRNTAVREVQENITSVDSLTLASSNTDFAFSLYKELVLKNPDENVVFSPFSICT
ALALLSLGAKSNTLKEILEGLKFNLTETPEPDIHQGFRYLLDLLSQPGNQVQISTGSALFIEKHLQILAE
FKEKARALYQAEAFTADFQQPLEATKLINDYVSNHTQGKIKELISDLDKRTLMVLVNYIYFKGKWEMPFD
PDDTCKSEFYLDENRSVKVPMMKINNLTTPYFRDEELSCTVVELKYTGNASAMFILPDQGKMQQVEASLQ
PETLRNWKDSLKPRLINELCLPKFSISTDYSLEHILPELGIRELFSTQADLSAITGTKDLRTSQVVHKAV
LDVAETGTEAAAGTGYQNLQCCQGVIYSMKIYFDRPFLMIISDTNTHIALFMAKVSNPESDENFLNVEYA
FPQVLEIMPEYRSVCTCCLPCLTRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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