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Report for CCDS15441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15441.1 Public Mus musculus 1 Tiprl 23 108 98 CCDS HistoryNCBI Gene:226591Re-query CCDS DB by CCDS ID:15441.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043235.7 ENSMUSP00000037514.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043235.7Link to Ensembl Protein Viewer:ENSMUSP00000037514.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043235Re-query CCDS DB by Protein ID:ENSMUSP00000037514
Original member Current member NCBI NM_145513.4 NP_663488.1 Accepted alive Link to Nucleotide Sequence:NM_145513.4Link to Protein Sequence:NP_663488.1Re-query CCDS DB by Nucleotide ID:NM_145513Re-query CCDS DB by Protein ID:NP_663488Link to BLAST:NP_663488.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663488.1 271 Q8BH58 271 100% 0 0

Chromosomal Locations for CCDS 15441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 165215740 165215880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165217783 165217845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165220099 165220194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165222529 165222660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165227505 165227604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165228268 165228447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165236730 165236833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGATGATCCACGGCTTTCAGAGCAGCCACCAGGACTTCTCCTTCGGGCCTTGGAAGCTGACGGCGTCCA
AGACCCACATCATGAAGTCTGCGGATGTGGAAAAGTTAGCTGACGAGCTGCACATGCCATCCCTCCCTGA
AATGATGTTTGGAGACAACGTTCTAAGGATCCAGCATGGCTCTGGCTTTGGAATAGAGTTCAATGCTACG
GACGCACTGAGATGTGTGAACAACTATCAGGGCATGCTCAAAGTAGCTTGTGCTGAAGAGTGGCAGGAAA
GTAGGACGGAGGGCGAACACTCCAAAGAAGTTATTAAACCATATGACTGGACCTATACAACAGATTATAA
AGGAACGCTGCTTGGAGAATCTCTTAAGTTAAAGGTTGTACCTACAACAGATCATATAGATACAGAAAAA
TTGAAAGCCAGAGAACAGATTAAATTTTTTGAAGAAGTTCTCCTGTTTGAAGATGAATTGCATGATCATG
GTGTTTCCAGCCTGAGTGTGAAAATTAGAGTGATGCCTTCCAGCTTCTTTCTGCTGCTGCGGTTTTTCCT
GAGAATTGATGGGGTGCTCATCAGAATGAATGACACGAGGCTTTACCATGAGGCTGACAAGACCTACATG
TTACGAGAATATACATCCAGAGAGAGCAAAATTGCTAATTTAATGCATGTTCCACCTTCCCTCTTCACGG
AACCTAATGAAATATCACAATATTTACCAATTAAGGAAGCAGTTTGTGAGAAGCTCGTATTTCCAGAAAG
AATTGATCCTAACCCAGTGGACTCACAAAGTACGCCCTCAGAATAA

Translation (271 aa):
MMIHGFQSSHQDFSFGPWKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQHGSGFGIEFNAT
DALRCVNNYQGMLKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTLLGESLKLKVVPTTDHIDTEK
LKAREQIKFFEEVLLFEDELHDHGVSSLSVKIRVMPSSFFLLLRFFLRIDGVLIRMNDTRLYHEADKTYM
LREYTSRESKIANLMHVPPSLFTEPNEISQYLPIKEAVCEKLVFPERIDPNPVDSQSTPSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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