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Report for CCDS25056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25056.1 Public Mus musculus 11 Ywhae 23 108 98 CCDS HistoryNCBI Gene:22627Re-query CCDS DB by CCDS ID:25056.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067664.9 ENSMUSP00000070993.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067664.9Link to Ensembl Protein Viewer:ENSMUSP00000070993.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000067664Re-query CCDS DB by Protein ID:ENSMUSP00000070993
Original member Current member NCBI NM_009536.4 NP_033562.3 Accepted alive Link to Nucleotide Sequence:NM_009536.4Link to Protein Sequence:NP_033562.3Re-query CCDS DB by Nucleotide ID:NM_009536Re-query CCDS DB by Protein ID:NP_033562Link to BLAST:NP_033562.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033562.3 255 P62259 255 100% 0 0

Chromosomal Locations for CCDS 25056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75733028 75733091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75751881 75752080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75755574 75755680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75756817 75757023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75759292 75759428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75764620 75764672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGATGATCGGGAGGATCTGGTGTACCAGGCGAAGCTGGCAGAGCAGGCCGAGCGATACGACGAAATGG
TGGAATCAATGAAGAAAGTAGCAGGGATGGACGTGGAGCTGACAGTTGAAGAACGAAACCTTTTATCTGT
TGCATATAAAAATGTGATTGGAGCCAGAAGAGCATCCTGGAGAATAATCAGCAGCATTGAACAGAAGGAA
GAAAACAAGGGAGGAGAGGACAAATTAAAGATGATTCGGGAGTACCGGCAAATGGTTGAAACTGAGCTCA
AGTTAATCTGTTGTGACATTCTGGATGTACTGGACAAACACCTCATTCCAGCAGCTAACACTGGCGAGTC
CAAGGTTTTCTATTATAAAATGAAAGGGGACTACCACAGGTATCTGGCTGAGTTTGCCACAGGAAATGAC
AGGAAGGAGGCAGCAGAGAACAGCCTCGTGGCTTACAAAGCTGCTAGTGACATTGCGATGACAGAACTTC
CTCCAACGCACCCCATTCGTTTAGGTCTTGCTCTCAACTTTTCCGTATTCTACTATGAAATTCTTAATTC
CCCCGACCGTGCCTGCAGGTTGGCAAAAGCAGCTTTTGATGACGCAATTGCAGAACTGGACACGCTGAGT
GAAGAAAGCTATAAGGACTCTACGCTCATCATGCAGCTGCTACGTGATAACCTGACGCTGTGGACCTCAG
ACATGCAGGGTGATGGTGAAGAGCAGAATAAAGAAGCGCTGCAGGATGTGGAAGATGAGAATCAGTGA

Translation (255 aa):
MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE
ENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGND
RKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLS
EESYKDSTLIMQLLRDNLTLWTSDMQGDGEEQNKEALQDVEDENQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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