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Report for CCDS39560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39560.1 Public Mus musculus 6 Vmn1r51 23 108 98 CCDS HistoryNCBI Gene:22296Re-query CCDS DB by CCDS ID:39560.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072859.5 ENSMUSP00000072637.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072859.5Link to Ensembl Protein Viewer:ENSMUSP00000072637.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072859Re-query CCDS DB by Protein ID:ENSMUSP00000072637
Original member Current member EBI ENSMUST00000174204.2 ENSMUSP00000133870.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174204.2Link to Ensembl Protein Viewer:ENSMUSP00000133870.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174204Re-query CCDS DB by Protein ID:ENSMUSP00000133870
Original member Current member EBI ENSMUST00000226977.1 ENSMUSP00000153783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226977.1Link to Ensembl Protein Viewer:ENSMUSP00000153783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226977Re-query CCDS DB by Protein ID:ENSMUSP00000153783
Original member Current member EBI ENSMUST00000227766.1 ENSMUSP00000153813.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227766.1Link to Ensembl Protein Viewer:ENSMUSP00000153813.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227766Re-query CCDS DB by Protein ID:ENSMUSP00000153813
Original member Current member EBI ENSMUST00000227109.1 ENSMUSP00000153842.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227109.1Link to Ensembl Protein Viewer:ENSMUSP00000153842.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227109Re-query CCDS DB by Protein ID:ENSMUSP00000153842
Original member Current member EBI ENSMUST00000226542.1 ENSMUSP00000153862.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226542.1Link to Ensembl Protein Viewer:ENSMUSP00000153862.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226542Re-query CCDS DB by Protein ID:ENSMUSP00000153862
Original member Current member EBI ENSMUST00000227876.1 ENSMUSP00000154223.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227876.1Link to Ensembl Protein Viewer:ENSMUSP00000154223.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227876Re-query CCDS DB by Protein ID:ENSMUSP00000154223
Original member Current member EBI ENSMUST00000227911.1 ENSMUSP00000154582.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227911.1Link to Ensembl Protein Viewer:ENSMUSP00000154582.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227911Re-query CCDS DB by Protein ID:ENSMUSP00000154582
Original member Current member EBI ENSMUST00000228880.1 ENSMUSP00000154676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228880.1Link to Ensembl Protein Viewer:ENSMUSP00000154676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228880Re-query CCDS DB by Protein ID:ENSMUSP00000154676
Original member Current member NCBI NM_011683.2 NP_035813.2 Accepted alive Link to Nucleotide Sequence:NM_011683.2Link to Protein Sequence:NP_035813.2Re-query CCDS DB by Nucleotide ID:NM_011683Re-query CCDS DB by Protein ID:NP_035813Link to BLAST:NP_035813.2

Chromosomal Locations for CCDS 39560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 90129104 90130093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGATGAGGGGAGCAGAGTTGCCAGGAGTTATGAATGAGATTCTGTTCTTTTCTCCTCAGCCACTGTTCT
CA
CATATGATGAATGAGAACAGCAGGGTACACACTCATTCTAACTTAAGGCACATCTTTTTCTCCGAAAT
T
GGCATTGGGATCTCAGGCAATAGCTTCCTTCTTCTCTTCCACATCCTCAAGTTCATTCATGGGCACAGG
TCC
AGACTCTCTGACCTGCCCATTGGTCTCTTGTCCCTAATCCACCTACTAATGCTACTGGTCATGGCAT
TC
ATAGCCACAGACATTTTTATTTCTTGGAGGGGTTGGGATGACATCATATGTAAATTCCTTGTGTACCT
G
TACAGAGTTTTGAGGGGTCTCTCCCTTTGTACCACCAGCATGTTGAGTGTCCTCCAGGCCATCATCCTC
AGT
CCCAGAAGCTCCTGTTTAGCAAAGTTCAAGCGTAAATCTCTCCATCATATCTCATGTGCCATTCTTT
TC
CTGAGTGTCCTCTATATGTTAATTGGCAGTCAACTCTTGGTATCCATCATTGCCACCCCAAATTTAAC
C
ACAAATGACTTTATTTATGTTACTCAGTCCTGCTCTATTCTACCCTTGAGTTACGTCATGCAAAGCATG
TTT
TCTACTCTACTGGTCATCAGGGATGTCTTTCTTATTAGTCTCATGGTTCTCTCAACTTGGTACATGG
TA
GCCCTCTTGTGTAGGCACAGGAAAAAGACCCAGCATCTGCAAGGTATCAGCCTTTCCCCCAAAACATC
C
CCAAAGCAAAGAGCTACCCAGACCCTCCTGATGCTCATGAGCTTCTTTGTGCTGATGACCATCTATGAC
ACT
ATTGTCTCCTGCTCAAGAACTATGTTCCTGAATGATCCAACATCTTACAATATGCAAATCTTTGTGG
TG
CACATCTATGCCACAGTAAGCCCTTTTGTGTTTATGAGCACTGAAAAACATATAGTTAACTGTTTGAG
G
TCTGTATGA


Translation (329 aa):
MMRGAELPGVMNEILFFSPQPLFSHMMNENSRVHTHSNLRHIFFSEIGIGISGNSFLLLFHILKFIHGHR
S
RLSDLPIGLLSLIHLLMLLVMAFIATDIFISWRGWDDIICKFLVYLYRVLRGLSLCTTSMLSVLQAIIL
S
PRSSCLAKFKRKSLHHISCAILFLSVLYMLIGSQLLVSIIATPNLTTNDFIYVTQSCSILPLSYVMQSM
F
STLLVIRDVFLISLMVLSTWYMVALLCRHRKKTQHLQGISLSPKTSPKQRATQTLLMLMSFFVLMTIYD
T
IVSCSRTMFLNDPTSYNMQIFVVHIYATVSPFVFMSTEKHIVNCLRSV




Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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