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Report for CCDS27169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27169.1 Public Mus musculus 14 Phf11a 23 108 98 CCDS HistoryNCBI Gene:219131Re-query CCDS DB by CCDS ID:27169.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062307.4 ENSMUSP00000053146.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062307.4Link to Ensembl Protein Viewer:ENSMUSP00000053146.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062307Re-query CCDS DB by Protein ID:ENSMUSP00000053146
Original member Current member NCBI NM_172603.3 NP_766191.1 Accepted alive Link to Nucleotide Sequence:NM_172603.3Link to Protein Sequence:NP_766191.1Re-query CCDS DB by Nucleotide ID:NM_172603Re-query CCDS DB by Protein ID:NP_766191Link to BLAST:NP_766191.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766191.1 293 Q8BVM9 293 100% 0 0

Chromosomal Locations for CCDS 27169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 59277349 59277569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59279347 59279418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59280708 59280839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59281873 59281922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59284314 59284447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59287481 59287588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59294820 59294941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 59297444 59297486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGGCCCAAGAGAAGCCAGGGTGCTCTAACCCAGTTCCCAATGGTGACTGTCCAATCATAGAGAAGATGG
AAAAAAGGACATGTGCCCTGTGCCCTGAAGGCCATGAGTGGAGTCAAATATACTTTTCACCATCAGCGAA
TATAGTTGCTCATGAAAACTGTTTGCTGTATTCATCAGGACTGGTGGAGTGTGAGGCTCCTGATCTACCT
AATACAGTTAGAAACTTTGATGTCAAATCTGTAAAGAAAGAGATCGGGAGAGGAAGAAGATTGAAATGCT
CATTTTGTAAAAACAAAGGAGCCACCATGGGATATGATTTACAGTCCTGCACCAAGAATTACCACTTATC
CTGTGCCATGGAAGACCACGCAATTCTACAAGTTGATGAAGATCATGGCACTTACAAATTATTTTGTCAA
AAACATGCTCCAGAGGGTCAAGAACCCACACAACGTGATGCAGCTGTCAAAGCTCCTTTCCTTAAGAAAT
GCCAGGAAGCAGGACTTCTTAATGTTTTACTTGAATACATACTAGAAAAAATGGATTTGATTCATGGAAG
ACTCCTGAATGAGACTGCCTCAGAGTCAGACTATGAAGGGATCGAGACCTTACTGTTTGGCTGTGGATTG
TTTGGAGACACACTAAGAAAATTCCAAGAAGTAATCAATAGTAAAGCTTGTGAATGGGAAGAAAGGCAAA
GGCTGATGAAGCAGCAGCTTGAGGCACTTGCAGACTTACAACAAAACTTGTGCTCATTTCAAGAAAATGG
GGACCTGGACTGCTCAAGTTCTACATCAGGATCCTTGCTACCTCCTGAGGACCACCAGGTCAGATGCCAG
GAGTCTCCTGAAGTGCAAGCAGGCTCAGGAGATAGCCTGTGA

Translation (293 aa):
MAQEKPGCSNPVPNGDCPIIEKMEKRTCALCPEGHEWSQIYFSPSANIVAHENCLLYSSGLVECEAPDLP
NTVRNFDVKSVKKEIGRGRRLKCSFCKNKGATMGYDLQSCTKNYHLSCAMEDHAILQVDEDHGTYKLFCQ
KHAPEGQEPTQRDAAVKAPFLKKCQEAGLLNVLLEYILEKMDLIHGRLLNETASESDYEGIETLLFGCGL
FGDTLRKFQEVINSKACEWEERQRLMKQQLEALADLQQNLCSFQENGDLDCSSSTSGSLLPPEDHQVRCQ
ESPEVQAGSGDSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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