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Report for CCDS25557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25557.1 Public Mus musculus 11 Tex2 23 108 98 CCDS HistoryNCBI Gene:21763Re-query CCDS DB by CCDS ID:25557.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042780.13 ENSMUSP00000041985.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042780.13Link to Ensembl Protein Viewer:ENSMUSP00000041985.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042780Re-query CCDS DB by Protein ID:ENSMUSP00000041985
Original member Current member NCBI NM_198292.3 NP_938034.2 Accepted alive Link to Nucleotide Sequence:NM_198292.3Link to Protein Sequence:NP_938034.2Re-query CCDS DB by Nucleotide ID:NM_198292Re-query CCDS DB by Protein ID:NP_938034Link to BLAST:NP_938034.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938034.2 1128 Q6ZPJ0 1128 100% 0 0

Chromosomal Locations for CCDS 25557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106503596 106503718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106506867 106506987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106511902 106512111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106513587 106513712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106519882 106520014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106529262 106529361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106533871 106534017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106544172 106544419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106546664 106547003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106548714 106548914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106566965 106568602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3387 nt):
ATGACAAGTCTGAATGGTCGCCATGCTGAGAAAACCATTGACATGCCAAAACCATCAGCCCCCAAAGTGC
ACGTGCAAAGGTCTGTGTCCCGAGACACCATCGCCATTCATTTCTCGGCTTCCGGGGAGGAGGAGGAGGA
AGAGGAGGAGGAGTTCAGGGGCTACCTGGAGGAGGGGCTAGATGACCAAAGCATTGTAACGGGGCTTGAA
GCCAAGGAGGACCTGTATCTTGAATCCCAGGGTGGCCATGACCCTGCAGGCCCCGTCTCGACGGCCCCTG
CAGATGGGCTGTCTGTGTCTGAGTCCCCTGCCATTTTGCCTGTCTCTGAGAACACTGTAAAGCTGCTGGA
GTCCCCTGCTCCAGCACTGCAGGTATTAAGTCCAGTGCCATTGGCTCTGTCTCCAGGATCATCTTCATCT
GGACCCTTAGCTAGTTCTCCCAGTGTGTCGTCCCTTTCTGAGCAGAAAACCAGTTCTTCGTCTCCACTGT
CTTCTCCTTCCAAGTCCCCTGTCCTGTCCTCCAGTGCCTCGTCCTCGGCCCTCTCAAGCGCAAAGCCCTT
CATGAGCCTGGTGAAGTCCCTGTCAACTGAGGTGGAGCCAAAAGAGTCCCCCCACCCCCCGAGGCACAGA
CACTTGATGAAGACTCTGGTCAAGTCTCTGTCCACAGACACTTCCCGGCAGGAGTCGGACACCGTGTCCT
ACAAGCCCCCCGACTCCAAACTCAACCTGCACCTCTTCAAACAGTTCACACAGCCACGGAACACGGGTGG
AGACTCCAAGACTGCGCCTTCTTCCCCCCTGACTTCGCCCTCTGACACTCGTTCCTTTTTTAAAGTGCCC
GAAATGGAGGCAAAAATCGAAGACACTAAGCGACGCCTTTCTGAAGTTATCTATGAGCCCTTCCAGCTCC
TCAGCAAGATCATCGGGGAGGAGAGCGGCAGCCATAGGCCCAAAGCCTTATCTGCAAGTGCTTCAGAGCT
CTCCAGCCTGTCCGGCTTGAACGGGCACTTGGAAAGCAATAACTACAGCATCAAGGAGGAGGAGGGGGAC
TCGGAGGGGGAAGGCTACGGCAGCGACTCCAACACCTCCAGGAGCGACCACCTGAAGCCCACTGAAGACG
CCTCGAAGGAAGTGGAGCCCAAGGGTTCCCAGGCGAGTAGTCTGAAGGACTTAGGTCTGAAGACAAGTTC
TCTGGTTCTTGAGAAGTGTTCTCTGTCTGCTTTAGTGAGCAAGGAGGATGAAGAGTTCTGTGAACTGTAC
ACGGAGGACTTTGAGCTGGAGACTGAGGGCGAGGGGAGACTTGATAAGACCCTCGATCTCCCCCTCAAGC
CAGAGGTGCTTGCCAGCGATGGCGTGGCTCTGGAGAGCGAGGATGAAGAGGACTCGGCCACCGAGCACCA
GGAGTTACCTGTAAAGACGCTCGGCTTCTTTATAATGTGTGTCTACGCGTACCTCATCCTCCCACTCCCC
TACTACATGAGTGGGCTCTTCCTGGGCGTCGGCCTCGGCTTCATGACTGCAGTCTGCATGATTTGGTTCT
TTACACCACCAAGTGCTCACAAACACCACAAATCACTCAAAGCTCTGCGGCACCAGAGCACGAGATCCCT
GGACATCAAGGAGCCCGAAATACTAAAGGGATGGATGAATGAGATTTACAACTATGATCCAGAAACTTAC
CACGCGACTTTGACGCACTCAGTCTTTGTCCGGCTCGAGGGTGGAACCTTAAGACTTTCAAAGCCCAACA
AAAACATATCCAGGAGGGCAAGCTACAATGAGACAAAGCCAGAGGTCACCTACATCAGCCAGAAAATCTA
TGACCTCTCAGACAGCAAGATTTATCTTGTACCTAAAAGCTTGGCTCGAAAGCGAATCTGGAATAAGAAG
TACCCCATTTGCATTGAACTTGGTCGGCAAGATGACTTTATGTCTAAGGCGCAGTCTGATAAGGAAGCTA
CTGAGGAGAAGCCGCCTCCTGAGAAAGAGCTGCCGAGCGAAGACCTCAAGAAGCCACCCCAGCCTCAAGA
GGGGACGAAGTCTAGCCAGCGAGACCCAATACTGTATCTGTTTGGGAGAACGGGCCGAGAGAAAGAGGAG
TGGTTCAGGCGGTTCATCCTGGCCTCGAGGCTGAAGTCAGAGCTCAGGAAGCCGGCGGGTGTTTCTGGAA
GTAAATCAGGGCTTCTGCCCGCACACAGCAGGCACAGCAGTCCCTCGGGGCACCTGAGCCACAGCCGCAG
CAGCAGCAAAGGCAGCGTGGAGGAAATGATGTCCCAGCCAAAGCAGAAGGAACTGGTGGGCAGCGTGCGA
CAGAAGATGCTCCTAGACTACAGTGTGTACATGGGCAGGTGTGTGCCCCAGGACAACCGAAGCCCCCACA
GGAGCCCCGTGCAGAGTGCAGAGAGCAGCCCCACAGCTTCGAAGAAGTTGCCAGAGGCCCCACCCTCTGA
GGAGGAAGAACAGGAAGCCTGGGTGAATGCTTTGCTTGGAAGAATATTTTGGGACTTCTTGGGCGAGAAA
TACTGGTCTGATGTGGTGTCGAAGAAAATCCAGATGAAACTCAGCAAAATTAAGCTCCCCTACTTTATGA
ATGAACTAACACTGACAGAGCTTGACATGGGTGTAGCTGTGCCAAAAATCCTTCAGGCCTTCAAGCCTTA
TGTTGATCACCAAGGACTCTGGATCGATTTGGAAATGTCTTACAATGGGTCCTTTCTGATGACTCTGGAA
ACCAAAATGAACTTGACCAAACTAGGTAAAGAGCCTCTTGTTGAAGCCCTGAAGGTTGGAGAAATTGGCA
AAGAAGGTTGCAGGCCCAGGGCATACTGTCTGGCTGACAGTGATGAAGAATCCTCCAGTGCTGGCTCCTC
TGAGGAAGATGACCCACCAGAACCCACTGCTGGAGACAAACAGCCGCTCCCCGGGGCTGAAGGGTACGTT
GGAGGTCATCGAACAAGCAAGATTATGAGGTTTGTTGATAAGATCACCAAATCAAAATATTTCCAAAAAG
CAACAGAGACAGAATTCATTAAAAAGAAGATCGAAGAAGTCTCTAATACACCACTGCTGCTAACTGTGGA
AGTGCAAGAGTGTCGAGGGACCTTGGCGGTCAACATCCCCCCACCACCGACTGACCGGATATGGTATGGT
TTCCGGAAGCCACCGTATGTGGAGCTGAAAGCTCGGCCAAAACTTGGAGAGAGAGAAGTGACTTTAGTTC
ACGTGACAGAGTGGATTGAGAAGAAACTGGAGCAGGAGCTTCAGAAAGTGTTTGTCATGCCAAACATGGA
TGACGTTTATATTCCTATAATGCACTCGGCCATGGACCCTCGCTCCACTTCCTGCCTCTTGAAAGAGCCA
CCTGTGGAGACCTCTGATCAGCTGTGA

Translation (1128 aa):
MTSLNGRHAEKTIDMPKPSAPKVHVQRSVSRDTIAIHFSASGEEEEEEEEEFRGYLEEGLDDQSIVTGLE
AKEDLYLESQGGHDPAGPVSTAPADGLSVSESPAILPVSENTVKLLESPAPALQVLSPVPLALSPGSSSS
GPLASSPSVSSLSEQKTSSSSPLSSPSKSPVLSSSASSSALSSAKPFMSLVKSLSTEVEPKESPHPPRHR
HLMKTLVKSLSTDTSRQESDTVSYKPPDSKLNLHLFKQFTQPRNTGGDSKTAPSSPLTSPSDTRSFFKVP
EMEAKIEDTKRRLSEVIYEPFQLLSKIIGEESGSHRPKALSASASELSSLSGLNGHLESNNYSIKEEEGD
SEGEGYGSDSNTSRSDHLKPTEDASKEVEPKGSQASSLKDLGLKTSSLVLEKCSLSALVSKEDEEFCELY
TEDFELETEGEGRLDKTLDLPLKPEVLASDGVALESEDEEDSATEHQELPVKTLGFFIMCVYAYLILPLP
YYMSGLFLGVGLGFMTAVCMIWFFTPPSAHKHHKSLKALRHQSTRSLDIKEPEILKGWMNEIYNYDPETY
HATLTHSVFVRLEGGTLRLSKPNKNISRRASYNETKPEVTYISQKIYDLSDSKIYLVPKSLARKRIWNKK
YPICIELGRQDDFMSKAQSDKEATEEKPPPEKELPSEDLKKPPQPQEGTKSSQRDPILYLFGRTGREKEE
WFRRFILASRLKSELRKPAGVSGSKSGLLPAHSRHSSPSGHLSHSRSSSKGSVEEMMSQPKQKELVGSVR
QKMLLDYSVYMGRCVPQDNRSPHRSPVQSAESSPTASKKLPEAPPSEEEEQEAWVNALLGRIFWDFLGEK
YWSDVVSKKIQMKLSKIKLPYFMNELTLTELDMGVAVPKILQAFKPYVDHQGLWIDLEMSYNGSFLMTLE
TKMNLTKLGKEPLVEALKVGEIGKEGCRPRAYCLADSDEESSSAGSSEEDDPPEPTAGDKQPLPGAEGYV
GGHRTSKIMRFVDKITKSKYFQKATETEFIKKKIEEVSNTPLLLTVEVQECRGTLAVNIPPPPTDRIWYG
FRKPPYVELKARPKLGEREVTLVHVTEWIEKKLEQELQKVFVMPNMDDVYIPIMHSAMDPRSTSCLLKEP
PVETSDQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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