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Report for CCDS39858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39858.1 Public Mus musculus 7 Rps16 23 108 98 CCDS HistoryNCBI Gene:20055Re-query CCDS DB by CCDS ID:39858.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082134.5 ENSMUSP00000103940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082134.5Link to Ensembl Protein Viewer:ENSMUSP00000103940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000082134Re-query CCDS DB by Protein ID:ENSMUSP00000103940
Original member Current member NCBI NM_013647.2 NP_038675.2 Accepted alive Link to Nucleotide Sequence:NM_013647.2Link to Protein Sequence:NP_038675.2Re-query CCDS DB by Nucleotide ID:NM_013647Re-query CCDS DB by Protein ID:NP_038675Link to BLAST:NP_038675.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038675.2 146 P14131 146 100% 0 0

Chromosomal Locations for CCDS 39858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28350804 28350851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28350992 28351093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28352177 28352273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28352363 28352410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28352494 28352639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGCCGTCCAAGGGTCCGCTGCAGTCCGTGCAGGTCTTCGGACGCAAGAAAACAGCCACGGCTGTGGCCC
ACTGCAAACGGGGAAATGGGCTCATCAAGGTGAACGGACGTCCCCTGGAGATGATCGAGCCGCGCACGCT
GCAGTACAAGTTACTGGAGCCTGTTTTGCTTCTGGGCAAGGAGCGATTTGCTGGTGTGGATATTCGGGTC
CGTGTGAAGGGTGGTGGACATGTGGCCCAAATTTATGCCATCCGACAGTCCATCTCAAAGGCCCTGGTAG
CTTATTACCAAAAATATGTGGATGAAGCCTCCAAGAAGGAGATCAAAGATATCCTCATCCAATACGATCG
GACCCTGCTTGTAGCTGACCCCCGTCGCTGCGAATCCAAAAAGTTTGGAGGTCCTGGTGCCCGTGCCCGA
TACCAGAAATCCTACCGATAA

Translation (146 aa):
MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRV
RVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARAR
YQKSYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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