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Report for CCDS19851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19851.1 Public Mus musculus 5 Tmem130 23 108 98 CCDS HistoryNCBI Gene:243339Re-query CCDS DB by CCDS ID:19851.1Re-query CCDS DB by GeneID:243339See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061446.7 ENSMUSP00000061100.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061446.7Link to Ensembl Protein Viewer:ENSMUSP00000061100.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061446Re-query CCDS DB by Protein ID:ENSMUSP00000061100
Original member Current member NCBI NM_177735.4 NP_808403.2 Accepted alive Link to Nucleotide Sequence:NM_177735.4Link to Protein Sequence:NP_808403.2Re-query CCDS DB by Nucleotide ID:NM_177735Re-query CCDS DB by Protein ID:NP_808403Link to BLAST:NP_808403.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808403.2 419 Q6NXM3 419 100% 0 0

Chromosomal Locations for CCDS 19851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144737343 144737492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144737804 144737916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144743596 144743798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144748657 144748741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144750816 144750982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144752288 144752447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144755211 144755516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144761457 144761532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCCAAGGCCACCGACGTCCTCGTCTTCTGGTTCGCTTGCCTCCTGCTCTTGGGTCCGGCGAGGGTGG
CGGCAGGTCTCTATAATCTTAGTCTTACTGCTGACGGTCCTGCTACCGTGGGCACCGAAGTGACCATCTC
AGCCAGCCTGGAGGTCAAGGACAATGGAAGCCTGCCCCTGCCTGCAGACACCCACCTCTACCGTTTCCAC
TGGATCCACACACCTCTGACACTCACTGCCAAGAATGAGAAGAATCTAACCTCGACCATCCACGTGGTGG
GCGGCGTGCCTGGGGACTTCCCAATCTCTGTCTGGGTTACTGCTGTCGACTGTTGGGTGTGCCAGCCATT
AGCCAGGAGCACTCTACTCCTCCCCATTAAAGAGTCCCTTGTGGGAAACATTGTCGTTACCCAGAACACC
TCCCTGTCTTGGCCGAACTCCTACATCACCAAGAGAAGTCTTAGACTGTCCTTTCTTCTCCATGACCCAA
GCGACTTCTTCAAGTCCGCTTCCTTCTTTTACCGATGGGACTTTGGAGACGGGACCTTGTTGATAACTGA
CAACCCTGTGGTGTATTACAACTACTCGAGCCCTGGAACCTTCACAGTGAAAGTCAGGGTGGTGGCAGAA
TGGGAGCAGATAAAGCCAGACACCACAAAGGGCACTATACAGAAGACTGGTGACTTCTCAGCATCGTTGG
ATCTGCGGGAGTCGCTTCAAGGCATCCAGATTTTGGGGCCCACCCTCCTGCAGACATTCCAAAAGCTGAC
AATGAACCTGAACTTCTTCGGAAGCCCACCGCTGCATGTGTGCTGGGGTCTCAAGCCGCAGTGTCTCCCA
CTGGAGGACAGAGAATGCCACGCTGTGTTGGTGACTCGGACATCTTTTAACCTGACCCACGTCTTCCAGG
ACCCCGGGGACTACTGCTTCATCTTCCGTGCTGAGAATGCTATCAGCAAGGCTCACCAGTACCACAGGAT
TCAGGTGTGGCCCTCCAGCTTCCAGCCATTTGTCTTTGCTTTCCCGTGTGCCACGCTAATCACCGTGCTG
CTGGTTTTTCTCATGTATATGACTGTGCGGAGCGCTGCAACCCAGAAGGACATCGTGGAGAGCCCAGGGG
CCACTGGGCTCAAGTGTTGCTGCCAGGTGTGCTGTGGATCCCTCTTTCTGGACTCCCCGTCTGAGTACCT
GGAAATCGTCCGAGAGAACCACGGGCTGCTTCCACCCCTCTACAAACCTGTGAAAACTTACAATGTGTGA

Translation (419 aa):
MAKATDVLVFWFACLLLLGPARVAAGLYNLSLTADGPATVGTEVTISASLEVKDNGSLPLPADTHLYRFH
WIHTPLTLTAKNEKNLTSTIHVVGGVPGDFPISVWVTAVDCWVCQPLARSTLLLPIKESLVGNIVVTQNT
SLSWPNSYITKRSLRLSFLLHDPSDFFKSASFFYRWDFGDGTLLITDNPVVYYNYSSPGTFTVKVRVVAE
WEQIKPDTTKGTIQKTGDFSASLDLRESLQGIQILGPTLLQTFQKLTMNLNFFGSPPLHVCWGLKPQCLP
LEDRECHAVLVTRTSFNLTHVFQDPGDYCFIFRAENAISKAHQYHRIQVWPSSFQPFVFAFPCATLITVL
LVFLMYMTVRSAATQKDIVESPGATGLKCCCQVCCGSLFLDSPSEYLEIVRENHGLLPPLYKPVKTYNV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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