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Report for CCDS15384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15384.1 Public Mus musculus 1 Xpr1 23 108 98 CCDS HistoryNCBI Gene:19775Re-query CCDS DB by CCDS ID:15384.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027741.11 ENSMUSP00000027741.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027741.11Link to Ensembl Protein Viewer:ENSMUSP00000027741.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027741Re-query CCDS DB by Protein ID:ENSMUSP00000027741
Original member Current member NCBI NM_011273.2 NP_035403.1 Accepted alive Link to Nucleotide Sequence:NM_011273.2Link to Protein Sequence:NP_035403.1Re-query CCDS DB by Nucleotide ID:NM_011273Re-query CCDS DB by Protein ID:NP_035403Link to BLAST:NP_035403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035403.1 695 Q9Z0U0-1 695 100% 0 0

Chromosomal Locations for CCDS 15384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155281010 155281070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155283213 155283434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155290195 155290331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155293109 155293275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155307622 155307816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155308951 155309122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155312759 155312938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155313171 155313361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155324314 155324395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155328599 155328682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155330338 155330487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155332163 155332386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155345553 155345654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155384611 155384662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155417166 155417234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGAAGTTCGCCGAGCACCTCTCCGCGCACATCACTCCCGAGTGGAGGAAGCAGTACATCCAGTATGAGG
CATTCAAGGATATGCTGTATTCAGCTCAGGACCAGGCACCTTCAGTTGAAGTTACAGATGAGGATACAGT
TAAGAGATATTTTGCCAAGTTTGAAGAAAAGTTTTTCCAAACCTGTGAAAAGGAACTTGCCAAAATCAAC
ACATTTTATTCAGAGAAGCTGGCAGAGGCTCAGCGCAGGTTTGCTACACTTCAGAATGAGCTTCAGTCAT
CGCTGGATGTGCAGAAAGAAAGCAGTGGTGTCACGACATTGCGACAGCGCAGAAAGCCAGTGTTCCACCT
GTCCCACGAGGAGCGTGTCCAACATAGGAACATTAAAGACCTTAAGCTGGCCTTCAGCGAGTTCTACCTC
AGTCTCATCCTGCTGCAGAACTATCAGAATCTGAATTTTACAGGGTTTCGGAAAATCCTCAAAAAGCATG
ACAAGATCCTGGAAACATCTCGTGGAGCAGATTGGCGAGTGATTCATGTAGAGGTGGCCCCATTTTATAC
ATGCAAGAAAATTAACCAGCTCATTTCTGAGACTGAGGCTGTGGTCACCAATGAACTTGAAGATGGTGAC
AGACAAAAGGCTATGAAGCGGTTACGGGTCCCTCCATTGGGAGCTGCTCAGCCTGCACCAGCATGGACTA
CTTTTAGAGTTGGCCTATTTTGTGGAATATTCATTGTGCTGAATATTACCCTTGTGTTTGCAGCTGTATT
TAAACTTGAAACAGATAGAACTGTATGGCCCTTGATAAGAATCTATCGGGGTGGCTTTCTTCTGATTGAA
TTCCTTTTTCTACTGGGCATCAACACATATGGTTGGAGACAAGCTGGAGTAAATCATGTCCTCATCTTTG
AACTTAATCCAAGAAACAATTTGTCTCATCAGCATCTCTTTGAGATTGCTGGATTCCTGGGGATCTTGTG
GTGCCTGAGCCTTCTGGCATGCTTCTTCGCTCCAATTAGTATCATCCCTATATATGTGTATCCACTAGCC
CTTTATGGGTTTATGGTCTTCTTTCTTATCAACCCCACCAAAACTTTCTACTATAAATCCAGATTTTGGC
TGCTCAAACTTCTGTTTCGAGTATTTACTGCTCCCTTCCATAAGGTAGGCTTTGCTGATTTCTGGCTGGC
CGATCAGCTGAACAGCCTGTCAGTGATTCTCATGGACCTGGAATATATGATCTGCTTCTACAGTTTTGAG
CTTAAATGGGATGAGAGTAAGGGCCTGTTGCCAAATGATCCACAAGAACCAGAATTTTGCCACAAATATT
CATATGGTGTGCGAGCCATTGTTCAATGTATTCCAGCTTGGCTTCGCTTCATCCAGTGCCTGCGCCGGTA
CCGTGACACGAGGAGGGCTTTTCCTCATCTAGTAAATGCTGGCAAATACTCCACAACTTTCTTCACCGTG
ACATTTGCAGCCCTTTACAGCACTCACGAAGAACAAAATCACTCTGACACCGTGGTGTTCTTTTACCTGT
GGGTCTTCTTTTGTATCATCAGTTCCTGCTATACCCTCATCTGGGATCTCAAGATGGACTGGGGTCTCTT
TGATAAGAATGCAGGAGAAAACACTTTCCTCCGGGAAGAAATTGTATACCCTCAAAAAGCCTATTACTAC
TGTGCCATCATAGAAGATGTGATACTGCGCTTCGCTTGGACTATCCAAATCTCTATTACTGCTACGTTTA
AGCCTCATGTTGGGAACATCATTGCTACTGTCTTTGCCCCCCTTGAGGTTTTCCGGCGATTTGTGTGGAA
CTTCTTCCGTCTGGAGAACGAGCATCTAAATAACTGTGGTGAATTCCGAGCCGTGCGGGACATCTCTGTG
GCCCCCCTCAACGCGGATGACCAGACACTACTTGAGCAGATGATGGACCAGGAGGATGGGGTTCGAAACC
GCCAGAAGAACCGGTCGTGGAAGTACAATCAGAGCATATCCCTGCGTAGGCCCCGCCTGGCTTCCCAATC
CAAGGCTCGCGACACTAAGGTATTGATAGAAGACACAGATGACGAAGCTAACACTTGA

Translation (695 aa):
MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQTCEKELAKIN
TFYSEKLAEAQRRFATLQNELQSSLDVQKESSGVTTLRQRRKPVFHLSHEERVQHRNIKDLKLAFSEFYL
SLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVIHVEVAPFYTCKKINQLISETEAVVTNELEDGD
RQKAMKRLRVPPLGAAQPAPAWTTFRVGLFCGIFIVLNITLVFAAVFKLETDRTVWPLIRIYRGGFLLIE
FLFLLGINTYGWRQAGVNHVLIFELNPRNNLSHQHLFEIAGFLGILWCLSLLACFFAPISIIPIYVYPLA
LYGFMVFFLINPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSFE
LKWDESKGLLPNDPQEPEFCHKYSYGVRAIVQCIPAWLRFIQCLRRYRDTRRAFPHLVNAGKYSTTFFTV
TFAALYSTHEEQNHSDTVVFFYLWVFFCIISSCYTLIWDLKMDWGLFDKNAGENTFLREEIVYPQKAYYY
CAIIEDVILRFAWTIQISITATFKPHVGNIIATVFAPLEVFRRFVWNFFRLENEHLNNCGEFRAVRDISV
APLNADDQTLLEQMMDQEDGVRNRQKNRSWKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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