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Report for CCDS73817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73817.1 Public Homo sapiens 16 NLRC3 24 110 108 CCDS HistoryNCBI Gene:197358Re-query CCDS DB by CCDS ID:73817.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73817.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359128.10 ENSP00000352039.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359128.10Link to Ensembl Protein Viewer:ENSP00000352039.6Re-query CCDS DB by Nucleotide ID:ENST00000359128Re-query CCDS DB by Protein ID:ENSP00000352039
Original member Current member NCBI NM_178844.4 NP_849172.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178844.4Link to Protein Sequence:NP_849172.2Re-query CCDS DB by Nucleotide ID:NM_178844Re-query CCDS DB by Protein ID:NP_849172Link to BLAST:NP_849172.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849172.2 1065 Q7RTR2-1 1065 100% 0 0

Chromosomal Locations for CCDS 73817.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3541825 3541915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3542191 3542274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3542692 3542775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3543425 3543508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3544246 3544329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3548135 3548218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3548670 3548753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3549142 3549225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3549697 3549780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3550414 3550497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3552196 3552279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3554242 3554325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3556911 3556994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3557593 3557676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3561702 3561788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3563009 3564758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3564859 3565036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3198 nt):
ATGAGGAAGCAAGAGGTGCGGACGGGCAGGGAGGCCGGCCAGGGCCACGGTACGGGCTCCCCAGCCGAGC
AGGTGAAAGCCCTCATGGATCTGCTGGCTGGGAAGGGCAGTCAAGGCTCCCAGGCCCCGCAGGCCCTGGA
TAGGACACCGGATGCCCCGCTGGGGCCCTGCAGCAATGACTCAAGGATACAGAGGCACCGCAAGGCCCTG
CTGAGCAAGGTGGGAGGTGGCCCGGAGCTGGGCGGACCCTGGCACAGGCTGGCCTCCCTCCTGCTGGTGG
AGGGCCTGACGGACCTGCAGCTGAGGGAACACGACTTCACACAGGTGGAGGCCACCCGCGGGGGCGGGCA
CCCCGCCAGGACCGTCGCCCTGGACCGGCTCTTCCTGCCTCTCTCCCGGGTGTCTGTCCCACCCCGGGTC
TCCATCACTATCGGGGTGGCCGGCATGGGCAAGACCACCCTGGTGAGGCACTTCGTCCGCCTCTGGGCCC
ATGGGCAGGTCGGCAAGGACTTCTCGCTGGTGCTGCCTCTGACCTTCCGGGATCTCAACACCCACGAGAA
GCTGTGTGCCGACCGACTCATCTGCTCGGTCTTCCCGCACGTCGGGGAGCCCAGCCTGGCGGTGGCAGTC
CCAGCCAGGGCCCTCCTGATCCTGGACGGCTTGGATGAGTGCAGGACGCCTCTGGACTTCTCCAACACCG
TGGCCTGCACGGACCCAAAGAAGGAGATCCCGGTGGACCACCTGATCACCAACATCATCCGTGGCAACCT
CTTTCCGGAAGTTTCCATCTGGATCACCTCCCGTCCCAGTGCATCTGGCCAGATCCCAGGGGGCCTGGTG
GACCGGATGACGGAGATCCGGGGCTTTAACGAGGAGGAGATCAAGGTGTGTTTGGAGCAGATGTTCCCCG
AGGACCAGGCCCTTCTGGGCTGGATGCTGAGCCAAGTGCAGGCTGACAGGGCCCTGTACCTGATGTGCAC
CGTCCCAGCCTTCTGCAGGCTCACGGGGATGGCGCTAGGCCACCTGTGGCGCAGCAGGACGGGGCCCCAG
GATGCAGAGCTGTGGCCCCCGAGGACCCTGTGCGAGCTCTACTCATGGTACTTTAGGATGGCCCTCAGCG
GGGAGGGGCAGGAGAAGGGCAAGGCAAGCCCTCGCATCGAGCAGGTGGCCCATGGTGGCCGCAAGATGGT
GGGGACATTGGGCCGTCTGGCCTTCCATGGGCTGCTCAAGAAGAAATACGTGTTTTACGAGCAAGACATG
AAGGCGTTTGGTGTAGACCTCGCTCTGCTGCAGGGCGCCCCGTGCAGCTGCTTCCTGCAGAGAGAGGAGA
CGTTGGCATCGTCAGTGGCCTACTGCTTCACCCACCTGTCCCTGCAGGAGTTTGTGGCAGCCGCGTATTA
CTATGGCGCATCCAGGAGGGCCATCTTCGACCTCTTCACTGAGAGCGGCGTATCCTGGCCCAGGCTGGGC
TTCCTCACGCATTTCAGGAGCGCAGCCCAGCGGGCCATGCAGGCAGAGGACGGGAGGCTGGACGTGTTCC
TGCGCTTCCTCTCCGGCCTCTTGTCTCCGAGGGTCAATGCCCTCCTGGCCGGCTCCCTGCTGGCCCAAGG
CGAGCACCAGGCCTACCGGACCCAGGTGGCTGAGCTCCTGCAGGGCTGCCTGCGCCCCGATGCCGCAGTC
TGTGCACGGGCCATCAACGTGTTGCACTGCCTGCATGAGCTGCAGCACACCGAGCTGGCCCGCAGCGTGG
AGGAGGCCATGGAGAGCGGGGCCCTGGCCAGGCTGACTGGTCCCGCGCACCGCGCTGCCCTGGCCTACCT
CCTGCAGGTGTCCGACGCCTGTGCCCAGGAGGCCAACCTGTCCCTGAGCCTCAGCCAGGGCGTCCTTCAG
AGCCTGCTGCCCCAGCTGCTCTACTGCCGGAAGCTCAGGCTGGACACCAACCAGTTCCAGGACCCCGTGA
TGGAGCTGCTGGGCAGCGTGCTGAGTGGGAAGGACTGTCGCATTCAGAAGATCAGCTTGGCGGAGAACCA
GATCAGTAACAAAGGGGCCAAAGCTCTGGCCAGATCCCTCTTGGTCAACAGAAGTCTGACCTCTCTGGAC
CTCCGCGGTAACTCCATTGGACCACAAGGGGCCAAGGCGCTGGCAGACGCTTTGAAGATCAACCGCACCC
TGACCTCCCTGAGCCTCCAGGGCAACACCGTTAGGGATGATGGTGCCAGGTCCATGGCTGAGGCCTTGGC
CTCCAACCGGACCCTCTCCATGCTGCACCTGCAGAAGAACAGCATCGGGCCCATGGGAGCCCAGCGGATG
GCAGATGCCTTGAAGCAGAACAGGAGTCTGAAAGAGCTCATGTTCTCCAGTAATAGTATTGGTGATGGAG
GTGCCAAGGCCCTGGCTGAGGCCCTGAAGGTGAACCAGGGCCTGGAGAGCCTGGACCTGCAGAGCAATTC
CATCAGTGACGCAGGAGTGGCAGCACTGATGGGGGCCCTCTGCACCAACCAGACCCTCCTCAGCCTCAGC
CTTCGAGAAAACTCCATCAGTCCCGAGGGAGCCCAGGCCATCGCTCATGCCCTCTGCGCCAACAGCACCC
TGAAGAACCTGGACCTGACAGCCAACCTCCTCCACGACCAGGGTGCCCGGGCCATCGCAGTGGCAGTGAG
AGAAAACCGCACCCTCACCTCCCTTCACCTGCAGTGGAACTTCATCCAGGCCGGCGCTGCCCAGGCCCTG
GGACAAGCACTACAGCTCAACAGGAGCCTCACCAGCTTAGATTTACAGGAGAACGCCATCGGGGATGACG
GAGCGTGTGCGGTGGCCCGTGCACTGAAGGTCAACACAGCCCTCACTGCTCTCTATCTCCAGGTGGCCTC
AATTGGTGCTTCAGGCGCCCAGGTGCTAGGGGAAGCCTTGGCTGTGAACAGAACCTTGGAGATTCTCGAC
TTAAGAGGAAATGCCATTGGGGTGGCTGGAGCCAAAGCCCTGGCAAATGCTCTGAAGGTAAACTCAAGTC
TCCGGAGACTCAATCTTCAAGAGAATTCTCTGGGGATGGACGGGGCGATATGCATTGCCACAGCACTGTC
TGGAAACCACAGGCTCCAGCATATCAATCTCCAGGGAAACCACATTGGGGACTCCGGGGCCAGGATGATC
TCAGAGGCCATCAAGACAAATGCTCCCACGTGCACTGTTGAAATGTGA

Translation (1065 aa):
MRKQEVRTGREAGQGHGTGSPAEQVKALMDLLAGKGSQGSQAPQALDRTPDAPLGPCSNDSRIQRHRKAL
LSKVGGGPELGGPWHRLASLLLVEGLTDLQLREHDFTQVEATRGGGHPARTVALDRLFLPLSRVSVPPRV
SITIGVAGMGKTTLVRHFVRLWAHGQVGKDFSLVLPLTFRDLNTHEKLCADRLICSVFPHVGEPSLAVAV
PARALLILDGLDECRTPLDFSNTVACTDPKKEIPVDHLITNIIRGNLFPEVSIWITSRPSASGQIPGGLV
DRMTEIRGFNEEEIKVCLEQMFPEDQALLGWMLSQVQADRALYLMCTVPAFCRLTGMALGHLWRSRTGPQ
DAELWPPRTLCELYSWYFRMALSGEGQEKGKASPRIEQVAHGGRKMVGTLGRLAFHGLLKKKYVFYEQDM
KAFGVDLALLQGAPCSCFLQREETLASSVAYCFTHLSLQEFVAAAYYYGASRRAIFDLFTESGVSWPRLG
FLTHFRSAAQRAMQAEDGRLDVFLRFLSGLLSPRVNALLAGSLLAQGEHQAYRTQVAELLQGCLRPDAAV
CARAINVLHCLHELQHTELARSVEEAMESGALARLTGPAHRAALAYLLQVSDACAQEANLSLSLSQGVLQ
SLLPQLLYCRKLRLDTNQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAKALARSLLVNRSLTSLD
LRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAEALASNRTLSMLHLQKNSIGPMGAQRM
ADALKQNRSLKELMFSSNSIGDGGAKALAEALKVNQGLESLDLQSNSISDAGVAALMGALCTNQTLLSLS
LRENSISPEGAQAIAHALCANSTLKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQAL
GQALQLNRSLTSLDLQENAIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGEALAVNRTLEILD
LRGNAIGVAGAKALANALKVNSSLRRLNLQENSLGMDGAICIATALSGNHRLQHINLQGNHIGDSGARMI
SEAIKTNAPTCTVEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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