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Report for CCDS22468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22468.1 Public Mus musculus 8 Rfx1 23 108 98 CCDS HistoryNCBI Gene:19724Re-query CCDS DB by CCDS ID:22468.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005600.5 ENSMUSP00000005600.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005600.5Link to Ensembl Protein Viewer:ENSMUSP00000005600.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000005600Re-query CCDS DB by Protein ID:ENSMUSP00000005600
Original member Current member NCBI NM_009055.4 NP_033081.3 Accepted alive Link to Nucleotide Sequence:NM_009055.4Link to Protein Sequence:NP_033081.3Re-query CCDS DB by Nucleotide ID:NM_009055Re-query CCDS DB by Protein ID:NP_033081Link to BLAST:NP_033081.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033081.3 963 P48377 963 100% 0 0

Chromosomal Locations for CCDS 22468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84073772 84074069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84079863 84079972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84080125 84080208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84081115 84081222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84082648 84082761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84084082 84084174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84085573 84085667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84087706 84088072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84090111 84090292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84090950 84091069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84091366 84091478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84092535 84092653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84092780 84092889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84092974 84093125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84093203 84093300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84094727 84094876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84094950 84095158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84095396 84095549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84095628 84095673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84095797 84095966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGGCAACACAGTCCTATGTTACTGAGCTACAGGCAGCCCCACAAGCATCCCAGCCGCCACAGGCCCCGC
CC
CAGGCCCTGCCCCAGCCACCACCCCCAGCAGCACCCCAGCCTCCTGCTGCAGCAACCCCCCAGCCCCA
G
TATGTCACCGAGCTGCAAAGCCCCCAGCCCCAGACGCAACCTCCGGGCAGCCAGAAGCAGTATGTGGCA
GAG
CTCCCTGCTGCCCCTGCACCCTCACAGCCTGCCACACCTGCCCCATCCCCTGTGGCTCAGCAGTATA
TC
GTGGTCACCGTATCGGAAGGTGCCATGCGGGCTAGTGAGACTGTGTCAGAAGCCAGCCCCAGTTCCAC
G
GCAAGCCAGACCGGTGTTCCCACCCAAGTGGTCCAGCAGGTGCAGGGCACCCAGCAGCGGCTGCTGGTC
CAG
GCAAGTGTGCAGGCCAAGCCAGGCCATGTGTCCCCCCTGCAGCTTACCAACATTCAGGTGCCACAGC
AG
GCTATCCCCACACAGCACCTGGTGGTGCAGAGCCCAGCACCGGGCACTAAGAGTGGCCAGGTCTCCCT
G
ACGGTGCACAGTGCCCAGCAGGTGCACTCTGCTCCTGAGAGGTCACCAGTGCAGGCCAACAACTCCACC
AGC
AAGACAGCTGGGACTCCTGCGGCCACTGTGCAGCAACTACAGGTCCACAGCGTCCAGCAGAGTGTCC
CT
GTCACCCAAGAGAGGTCAGTAGTCCAGGCCACTCCACAGACCAAAGCTGGCCCGGTGCAGCAGCTGAC
T
GTGCAGGGACTGCAGCCAGTTCACGTTGCTCAAGAGGTACAGCAACTCCCTCAGGTGCCTGTCCCACAC
GTG
TATTCCAGCCAGGTGCAGTACGTGGAAGGTGGCGATGCCAGCTACACAGCCAGCGCCATCCGCTCTA
GC
ACCTACCAGTACCCGGAGACGCCTATCTACACGCAGACGGCAGGCACCAGCTACTATGAGGCTTCGGG
C
ACGGCTGCCCAGGTCAGCACGCCGGCTACTTCCCAGACGGTGGCCAGCAGCGGCTCAGTGCCCATGTAT
GTG
TCCGGCAGCCCAATTGTCGCCAGCTCATCCAGCAGCGAGGCTGGGGCCAGCAACAGCAGTGTGGGTG
CA
GGGGGCAATGGGGGAGGCGGCAGCAGTGGTGGTGGCAGTGGCGGCAGCAGCGGCAGCGGAGCAGGCAC
C
TACGTGATCCAAGGCGGCTACATGCTAGGCAATGCCAGCCAGTCTTACTCCCACACCACCCGTGCCTCA
CCA
GCCACAGTCCAGTGGCTCCTGGATAATTACGAGACCGCTGAGGGCGTGAGCCTGCCACGGAGCACCC
TC
TACTGCCACTACCTGCTGCACTGCCAAGAGCAGAAGCTGGAGCCAGTTAATGCCGCCTCTTTCGGCAA
G
CTCATCCGCTCGGTATTCATGGGTCTGCGCACGCGCCGTCTGGGCACCAGGGGCAACTCTAAGTACCAC
TAT
TACGGCCTGCGGATCAAAGCCAGCTCACCCCTGCTGCGGCTGATGGAGGACCAGCAGCACATGGCCA
TG
CGGGGCCAGCCCTTCTCCCAGAAACAGAGGCTGAAGCCCATCCAGAAGATGGAGGGCGTGGCCAACGG
T
GTTGCCGTGGGGCAGCAGAGCACAGGGCTGTCAGACATCAGCGCCCAGGTGCAGCAGTACCAGCAGTTC
CTG
GATGCCTCCAGGAGCTTGCCTGATTTTGCTGAGTTGGACCTCCAGGGCAAAGTGCTGCCTGAGGGTG
TC
GGTCCTGGGGACATCAAGGCCTTCCAGGTCCTGTACCGGGAGCACTGTGAGGCCATCGTGGACGTCAT
G
GTAAACCTGCAGTTCACACTGGTAGAAACGCTGTGGAAGACCTTCTGGAGATACAACCTTAGCCAGCCC
AGT
GAGGCTCCACCACTGGCCGTGCATGACGAGGCCGAGAAGCGGCTGCCCAGGGCCAGTCTGGTGCTCC
TC
TCCAAGTTCCAGCCTGTGCTTCAGTGGACCAAGCACTGTGACAATGTGCTGTACCAGGGCCTGGTGGA
G
ATCCTCATCCCTGATGTTCTGCGGCCCATCCCCAGTGCCTTGACCCAAGCAATCCGGAACTTTGCCAAG
AGC
CTGGAGAGCTGGCTCACCCATGCCATGGTGAACATCCCTGAGGAGATGCTGCGGGTGAAGGTGGCAG
CA
GCTGGCGCCTTCGCACAGACACTGCGGCGCTACACATCGCTCAACCACTTGGCGCAGGCGGCGCGGGC
A
GTGCTGCAGAACACTGCACAGATCAACCAGATGCTAAGCGACCTCAATCGGGTGGACTTCGCAAACGTC
CAG
GAGCAGGCCTCGTGGGTGTGTCGCTGTGAGGACCGTGTGGTGCAGCGTTTGGAGCAGGACTTCAAGG
TG
ACGCTGCAGCAGCAGAACTCACTGGAGCAATGGGCAGCCTGGCTGGACGGCGTTGTGAGCCAGGTGCT
C
AAGCCCTACCAGGGCAGTTCCGGCTTCCCCAAGGCGGCCAAGCTCTTCCTCCTCAAGTGGTCCTTCTAC
AG
C
TCCATGGTAATCCGGGACCTGACCCTGCGCAGTGCTGCCAGCTTCGGCTCCTTCCACCTCATCCGGC
TG
CTCTATGACGAGTACATGTACTACCTGATCGAGCACAGAGTGGCCCAGGCCAAGGGCGAGACCCCAAT
C
GCAGTCATGGGAGAGTTTGCAAACCTGGCCACCTCACTGAATCCCTTGGACCCTGACAAAGATGAAGAA
GAA
GAGGAGGAAGAGGAGAGTGAGGATGAGCTGCCACAAGACATCTCGCTGGCGGCTGGCAGCGAGTCTC
CC
GCACTAGGCCCTGAAGCTCTGGAGCCACCAGCGAAACTGGCGCGGACTGACACTCGTGGCCTCTTTGT
G
CAGGCCCTGCCCTCCAGCTAA


Translation (963 aa):
MATQSYVTELQAAPQASQPPQAPPQALPQPPPPAAPQPPAAATPQPQYVTELQSPQPQTQPPGSQKQYVA
E
LPAAPAPSQPATPAPSPVAQQYIVVTVS
EGAMRASETVSEASPSSTASQTGVPTQVVQQVQGTQQRLLV
Q
ASVQAKPGHVSPLQLTNIQVPQQ
AIPTQHLVVQSPAPGTKSGQVSLTVHSAQQVHSAPERSPVQANNST
S
KTAGTPAATVQQLQVHSVQQSVPVTQE
RSVVQATPQTKAGPVQQLTVQGLQPVHVAQEVQQLPQVPVPH
V
YSSQVQYVEGGDASYTASA
IRSSTYQYPETPIYTQTAGTSYYEASGTAAQVSTPATSQTVASSGSVPMY
V
SGSPIVASSSSSEAGASNSSVGAGGNGGGGSSGGGSGGSSGSGAGTYVIQGGYMLGNASQSYSHTTRAS
P
AT
VQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYH
Y
YGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQ
RLKPIQKMEGVANGVAVGQQSTGLSDISAQVQQYQQF
L
DASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQP
S
EAPPLA
VHDEAEKRLPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAK
S
LESWLTHAMVNIPEEMLRVK
VAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANV
Q
EQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY
S
SMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEE
E
EEEEESEDELPQDISLAAGSESPALGPEALEPPAKLARTDTRGLFVQALPSS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser