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Report for CCDS25545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25545.1 Public Mus musculus 11 Kcnh6 23 108 98 CCDS HistoryNCBI Gene:192775Re-query CCDS DB by CCDS ID:25545.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25545.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001965.13 ENSMUSP00000001965.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001965.13Link to Ensembl Protein Viewer:ENSMUSP00000001965.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001965Re-query CCDS DB by Protein ID:ENSMUSP00000001965
Original member Current member NCBI NM_001037712.2 NP_001032801.1 Accepted alive Link to Nucleotide Sequence:NM_001037712.2Link to Protein Sequence:NP_001032801.1Re-query CCDS DB by Nucleotide ID:NM_001037712Re-query CCDS DB by Protein ID:NP_001032801Link to BLAST:NP_001032801.1

Chromosomal Locations for CCDS 25545.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106008203 106008278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106008983 106009213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106014128 106014289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106014385 106014590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106017235 106017660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106018752 106019151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106020122 106020321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106020491 106020743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106023725 106023918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106025794 106025878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106026716 106026872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106027557 106027737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106033783 106034064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGCCAGTCCGCAGGGGCCACGTTGCTCCCCAAAACACTTACTTGGACACCATCATCCGCAAGTTTGAGG
GCCAGAGTCGTAAGTTCCTGATTGCCAATGCACAGATGGAGAACTGTGCCATCATCTACTGCAATGATGG
CTTCTGCGAACTCTTCGGCTACTCCCGTGTGGAGGTGATGCAGCGACCCTGTACCTGTGACTTCCTCACT
GGCCCGAACACTCCGAGCAGTGCTGTGTCCCGCCTGGCGCAGGCCCTGCTTGGGGCTGAAGAGTGCAAGG
TGGACATCCTCTACTATCGCAAGGATGCCTCCAGCTTCCGCTGCCTGGTGGATGTGGTCCCTGTGAAGAA
CGAGGATGGGGCTGTCATCATGTTCATCCTCAATTTCGAGGACCTGGCCCAGCTCCTGGCCAAGAGCAGC
AGCCGCAGCCTGACCCAACGTTTGTTGTCACACAGCTTCCTGGGCTCTGAGGGCTCTCACAGCAGGCCAA
GCGGACAGGGGCCTGGTCCAGGCAGGGGCAAGTATGGAACTGTCAGCCAGATCCCGCAGTTCACGCTCAG
CTTTGTGGAGTTCAACCTGGAGAAGCACCGCTCAGGCTCCACCACAGAGATTGAGATCATCGCTCCCCAC
AAGGTGGTGGAGCGGACACAGAATGTCACTGAAAAGGTCACGCAGGTCCTGTCCCTGGGTGCAGATGTGC
TGCCAGAGTACAAGCTGCAGGCACCGCGCATTCACCGAGGTACCATTCTGCACTACAGCCCCTTCAAGGC
TGTATGGGACTGGCTCATCTTGCTCTTAGTCATCTATACAGCGGTCTTCACGCCCTACTCTGCTGCCTTT
CTGCTTAGCGACCAGGACGACTCACAGCGTGGTACCTGCGGCTATACCTGCAGCCCGCTCACCGTGGTGG
ACCTCATCGTGGATATCATGTTTGTGGTGGATATTGTCATCAACTTCCGAACCACCTACGTCAACACTAA
TGACGAGGTGGTCAGCCACCCCCGACGAATCGCCGTCCACTATTTCAAGGGCTGGTTCCTCATTGACATG
GTGGCTGCCATCCCTTTTGACTTGCTTATCTTCCGCACTGGCTCAGATGAGACCACCACCCTGATCGGGT
TACTGAAGACGGCGCGCCTCCTACGGCTGGTGCGCGTGGCCCGGAAGCTGGACCGCTATTCTGAATACGG
GGCCGCCGTACTCTTCCTGCTCATGTGTACTTTTGCGCTCATTGCGCACTGGCTGGCCTGTATCTGGTAC
GCCATCGGCAATGTGGAGCGACCCTACTTGGAGCCCAAGATTGGTTGGCTGGACAGCCTGGGCGCGCAGC
TTGGCAAGCACTATAACGGCAGCGACCCAGCCTCGGGACCCTCTGTCCAAGACAAGTATGTCACCGCCCT
CTACTTCACCTTCAGCAGCCTCACTAGTGTGGGCTTCGGCAATGTGTCACCCAACACCAACTCTGAGAAG
GTCTTCTCTATCTGCGTCATGCTCATTGGCTCACTTATGTACGCCAGCATCTTTGGCAACGTGTCGGCCA
TCATCCAGCGCCTGTACTCAGGCACGGCTCGCTACCACACTCAGATGCTGCGGGTCAAGGAGTTCATCCG
CTTCCACCAGATCCCCAACCCACTGAGGCAGCGCCTGGAAGAGTATTTCCAGCACGCCTGGTCCTACACC
AATGGCATCGACATGAACGCGGTGCTGAAAGGCTTCCCTGAGTGCCTGCAGGCGGACATCTGCCTGCACC
TGCACCGCGCTCTGTTGCAGCACTGCCCCGCCTTCCGCGGCGCCAGCAAGGGGTGCCTGCGCGCGCTCGC
CGTCAAGTTCAAGACCACGCACGCGCCGCCTGGGGACACGCTGGTGCACCTGGGCGACGTGCTTTCCACT
CTCTACTTCATCTCCCGCGGCTCCATCGAGATCCTGCGCGATGACGTGGTCGTGGCCATTCTAGGGAAGA
ATGACATCTTTGGGGAGCCTGCCAGTCTCCATGCCAGACCAGGCAAATCAAGCGCCGATGTGCGTGCCCT
GACCTACTGCGACCTGCACAAGATCCATCGAGCAGACCTGCTGGAGGTGCTGGACATGTACCCCGCCTTT
GCAGATACCTTCTGGAATAAGCTAGAGGTCACCTTCAACCTGCGGGACGCAGATGGGGGTCTCCACTCAA
CACCCCGACAGGCCCCAGGCAACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGCCAATCAGGTGCTGC
CCCTTCCCTGAGCATTTCAGACACATCTGGGCTTTGGCCTGAATTGCTACAGCAAATGCCCCCAAGTCCC
CCAAACCCACGAGAGAAGCTGGATTGCTGGCCTCGGGAGCTAGGCTTTAAGTTAGAACAGCTCCAAGCCC
AGATGAACAGACTGGAGTCCCGCGTGTCGTCAGACCTCAGCCGCATCCTACAGCTACTTCAGCATCCACA
GGGCCACCCCGGCTACATCTTGGGGGCCCCTGCCTCCAGTGACCTGGCCTTGTTTCCTGAAACTTCAGTG
ACTCAGAGTTCAGAGTCGATGCTTCTGGTGGGACATCTGCCCTCTGCACAGACCCTAAGCTATGGTGATT
TGGACAAACATATCCGGATGCCCAGGAATTTCTCCCCCAGGATACCTCACGTGGCCGCGGCAATGGACAA
ATCTCTGGTGCCGTCCTCAGAACAAGAGCAGCCCAAGGGGCTCCTGTCACCTCTGGCCTCACCTCTGTGT
CCCCTGGAAGTACAGGGACTGGGTGGTCCCCACTTTTCCTCCCTCCCTGAACACCTCAGCTCCGTTCCCA
AGCAGCTGGAATTCCAGAGACACGGTTCAGATCCTGGATTCACAAGGAGTTAG

Translation (950 aa):
MPVRRGHVAPQNTYLDTIIRKFEGQSRKFLIANAQMENCAIIYCNDGFCELFGYSRVEVMQRPCTCDFLT
GPNTPSSAVSRLAQALLGAEECKVDILYYRKDASSFRCLVDVVPVKNEDGAVIMFILNFEDLAQLLAKSS
SRSLTQRLLSHSFLGSEGSHSRPSGQGPGPGRGKYGTVSQIPQFTLSFVEFNLEKHRSGSTTEIEIIAPH
KVVERTQNVTEKVTQVLSLGADVLPEYKLQAPRIHRGTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAF
LLSDQDDSQRGTCGYTCSPLTVVDLIVDIMFVVDIVINFRTTYVNTNDEVVSHPRRIAVHYFKGWFLIDM
VAAIPFDLLIFRTGSDETTTLIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWY
AIGNVERPYLEPKIGWLDSLGAQLGKHYNGSDPASGPSVQDKYVTALYFTFSSLTSVGFGNVSPNTNSEK
VFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYT
NGIDMNAVLKGFPECLQADICLHLHRALLQHCPAFRGASKGCLRALAVKFKTTHAPPGDTLVHLGDVLST
LYFISRGSIEILRDDVVVAILGKNDIFGEPASLHARPGKSSADVRALTYCDLHKIHRADLLEVLDMYPAF
ADTFWNKLEVTFNLRDADGGLHSTPRQAPGNQDPQGFFLNDSQSGAAPSLSISDTSGLWPELLQQMPPSP
PNPREKLDCWPRELGFKLEQLQAQMNRLESRVSSDLSRILQLLQHPQGHPGYILGAPASSDLALFPETSV
TQSSESMLLVGHLPSAQTLSYGDLDKHIRMPRNFSPRIPHVAAAMDKSLVPSSEQEQPKGLLSPLASPLC
PLEVQGLGGPHFSSLPEHLSSVPKQLEFQRHGSDPGFTRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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