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Report for CCDS19256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19256.1 Public Mus musculus 5 Slc2a9 23 108 98 CCDS HistoryNCBI Gene:117591Re-query CCDS DB by CCDS ID:19256.1Re-query CCDS DB by GeneID:117591See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005238.12 ENSMUSP00000005238.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005238.12Link to Ensembl Protein Viewer:ENSMUSP00000005238.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005238Re-query CCDS DB by Protein ID:ENSMUSP00000005238
Original member Current member NCBI NM_145559.2 NP_663534.1 Accepted alive Link to Nucleotide Sequence:NM_145559.2Link to Protein Sequence:NP_663534.1Re-query CCDS DB by Nucleotide ID:NM_145559Re-query CCDS DB by Protein ID:NP_663534Link to BLAST:NP_663534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663534.1 416 Q3T9X0-4 416 100% 0 0

Chromosomal Locations for CCDS 19256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38351083 38351337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38362843 38362970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38379918 38379993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38382043 38382144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38391714 38391824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38436540 38436685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38440650 38440774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38453102 38453262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38477395 38477493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38483317 38483364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGAAGCTCAGTGAAAAGAACTCCGCAGAAACCAAGGAAAGCCAGCGGAAATGGTCCTTCTCGCTCGTCG
TGGCAGCTCTCGTGGGAGCCTTCGGGTCCTCCTTCCTCTACGGGTACAACCTCTCCGTGGTGAACGCGCC
CACGCCGTATATCAAGGCCTTTTACAATGGAACCTGGTACAGGAGGCATGGACAGCCCATTGACCCGGAT
ACCCTGACTCTGCTCTGGTCTGTGACTGTGTCCATATTTGCGATTGGTGGCCTGGTGGGAACGCTGATGG
TGAAGATGATTGGAAAGTTTCTTGGGAGGAAGTCCACATTGCTGGTCAACAATGGATTTGCCATTTCCGC
AGCGTTGCTGATGGCATGCTCACTCCGGGCAGGAACCTTTGAGATGCTCATTGTGGGACGGTTCATCATG
GGTGTGGATGGAGGCATTGCACTCAGCGCGCTCCCCATGTATCTCAACGAGATCTCACCCAAGGAGATCC
GGGGCTCTCTGGGCCAGGTGACTGCCATCTTCATCTGCATTGGCGTGTTTTCTGGACAGTTGCTGGGCCT
GCCGGAGCTGCTGGGAAGGATCTGGTTCTACACCAACAGCATCTTTGGGAAAGCTGGGATCCCTCAGGAC
AAGATCCCATACATCACCCTGAGCACGGGAGGAATTGAAACACTGGCTGCTATCTTCTCTGGCTTGGTCA
TTGAGCGCTTAGGAAGGAGACCTCTCCTCATTGGTGGCTTCGGGCTGATGGCCCTCTTCTTTGGGACCCT
CACCGCGACACTGACCCTGCAGGACCAAGCTCCCTGGGTCCCTTACCTCAGCATTGTGTGCATCTTGGCC
ATCATTGCCTCGTTCTGCAGCGGTCCAGGTGGGATCCCATTCATCCTGACCGGAGAGTTCTTCCAACAGT
CAGAGCGACCGGCAGCCTTCATGATCGCAGGCACAGTCAACTGGCTCTCAAACTTCGCCGTAGGGCTCCT
TTTCCCTTTCATCCAGAAAAGCCTGGACTCCTACTGCTTCCTCGTCTTCGCCACAATATGTATCGCAGGT
GCTACCTACTTCTATTTTGTCCTCCCGGAGACCAAGAACAGAACCCATGCAGAAATCAGCCAGGCATTTG
CCAAGAGGAACAAGGCTCAGCCCCCAGAGGTGAAGGCTGATTCAGCCATGACTGAGGAGAAGGCCAACAG
CCAGACTGAGCCCGATTCATCCTCCACGCTGGACAGCTATGGCCAAAACAAAATTGTCTAA

Translation (416 aa):
MKLSEKNSAETKESQRKWSFSLVVAALVGAFGSSFLYGYNLSVVNAPTPYIKAFYNGTWYRRHGQPIDPD
TLTLLWSVTVSIFAIGGLVGTLMVKMIGKFLGRKSTLLVNNGFAISAALLMACSLRAGTFEMLIVGRFIM
GVDGGIALSALPMYLNEISPKEIRGSLGQVTAIFICIGVFSGQLLGLPELLGRIWFYTNSIFGKAGIPQD
KIPYITLSTGGIETLAAIFSGLVIERLGRRPLLIGGFGLMALFFGTLTATLTLQDQAPWVPYLSIVCILA
IIASFCSGPGGIPFILTGEFFQQSERPAAFMIAGTVNWLSNFAVGLLFPFIQKSLDSYCFLVFATICIAG
ATYFYFVLPETKNRTHAEISQAFAKRNKAQPPEVKADSAMTEEKANSQTEPDSSSTLDSYGQNKIV


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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