NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28030.1 Public Mus musculus 16 Mrpl40 23 108 98 CCDS HistoryNCBI Gene:18100Re-query CCDS DB by CCDS ID:28030.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023391.15 ENSMUSP00000023391.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023391.15Link to Ensembl Protein Viewer:ENSMUSP00000023391.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023391Re-query CCDS DB by Protein ID:ENSMUSP00000023391
Original member Current member NCBI NM_010922.2 NP_035052.2 Accepted alive Link to Nucleotide Sequence:NM_010922.2Link to Protein Sequence:NP_035052.2Re-query CCDS DB by Nucleotide ID:NM_010922Re-query CCDS DB by Protein ID:NP_035052Link to BLAST:NP_035052.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035052.2 206 Q9Z2Q5 206 100% 0 0

Chromosomal Locations for CCDS 28030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18872338 18872662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18873537 18873695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18875324 18875407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18876471 18876523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGCTACCGGGGTGATGCTGTGTGCTGCGCGGGCTCTGCGGCCTCGGAGCTGGATCCCTGGAACCTGCC
AGGCACACGTCAGACACACCCACCAGAGAGCTTCCTTACTGGCCTTCTGGGATCTCATCCCCATGAGAGC
AGAACCTCTGCGGAAGAAGAAGAAGGTAGACCCCAGAAAGGATCAAGCAGCAAAGGATCGCTTGAAAAAG
AGGATCCGAAAACTGGAAAAAGCCTCCCAAGAACTGATTCCTATTGAAGATTTTATTACCCCTGTGAGGT
TCTTGGATAAATCAAGACAGCGACCTCAGGAGGAGCATTCACCTGAGGAGAGTGAACGGAGAGCTCTTCT
GCTGAAGAGGTGGGCACTGTTTAAGCAGCAGGAGCATGAGATGGAGAGGGACGCCATCAGATCCATGCTA
GAAGCCCAGCAGGAAGCCCTGGAGGAGCTGAAACTTGAATCTGCAGAGCTCTATGCCGAGGCCATAAAGC
GGGATACCAGCCTATTCCCCTTCGAGAAAGAAGGGCCACATTACACACCACCTATCTCTAACTACCAGGC
CCCTGAAGGCAGGTACAATGATATCACCAAGGTGTACACACAAGTAGAATTCAAAAGATAA

Translation (206 aa):
MATGVMLCAARALRPRSWIPGTCQAHVRHTHQRASLLAFWDLIPMRAEPLRKKKKVDPRKDQAAKDRLKK
RIRKLEKASQELIPIEDFITPVRFLDKSRQRPQEEHSPEESERRALLLKRWALFKQQEHEMERDAIRSML
EAQQEALEELKLESAELYAEAIKRDTSLFPFEKEGPHYTPPISNYQAPEGRYNDITKVYTQVEFKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH