NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19617.1 Public Mus musculus 5 Lhx5 23 108 98 CCDS HistoryNCBI Gene:16873Re-query CCDS DB by CCDS ID:19617.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031591.9 ENSMUSP00000031591.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031591.9Link to Ensembl Protein Viewer:ENSMUSP00000031591.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031591Re-query CCDS DB by Protein ID:ENSMUSP00000031591
Original member Current member NCBI NM_008499.5 NP_032525.1 Accepted alive Link to Nucleotide Sequence:NM_008499.5Link to Protein Sequence:NP_032525.1Re-query CCDS DB by Nucleotide ID:NM_008499Re-query CCDS DB by Protein ID:NP_032525Link to BLAST:NP_032525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032525.1 402 P61375 402 100% 0 0

Chromosomal Locations for CCDS 19617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120432281 120432453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120434491 120434714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120435351 120435628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120436308 120436473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120439958 120440325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGATGGTGCACTGTGCTGGCTGTGAGCGGCCCATCCTCGACCGCTTTCTGCTGAACGTACTAGACCGCG
CGTGGCATATCAAATGTGTTCAATGCTGCGAGTGCAAAACCAACCTCTCGGAGAAGTGCTTCTCACGGGA
AGGCAAGCTATACTGTAAAAACGACTTTTTCAGGCGCTTTGGCACAAAGTGCGCCGGCTGCGCGCAAGGT
ATCTCTCCGAGCGACCTGGTACGGAAGGCCCGGAGCAAAGTCTTCCACCTCAACTGCTTCACCTGTATGG
TGTGCAATAAGCAGCTATCCACCGGAGAGGAGCTCTACGTGATCGACGAGAACAAGTTTGTGTGCAAGGA
CGACTACTTAAGCTCCTCTAGCCTCAAGGAAGGAAGTCTCAACTCGGTGTCGTCCTGTACGGACCGCAGT
TTGTCCCCGGACCTCCAGGATCCGTTACAGGACGACCCCAAAGAGACCGACAATTCGACCTCATCGGACA
AGGAAACCGCTAACAACGAGAATGAGGAACAGAACTCCGGCACCAAACGGCGCGGCCCGCGCACCACCAT
CAAGGCCAAGCAGCTGGAGACGCTCAAGGCAGCCTTCGCAGCCACGCCCAAGCCCACGCGCCACATTCGC
GAACAGCTGGCACAGGAGACGGGCCTCAACATGAGGGTCATTCAGGTGTGGTTTCAGAACCGAAGGTCCA
AAGAACGCCGCATGAAACAGCTGAGCGCTCTGGGCGCGCGGAGACACGCCTTCTTCCGGAGTCCGCGGCG
CATGCGTCCCCTGGGCGGCCGCTTGGACGAGTCTGAGATGTTGGGGTCTACCCCATACACTTATTACGGA
GACTACCAAAGTGACTACTACGCTCCGGGAGGCAATTACGATTTCTTCGCGCACGGTCCGCCGTCACAGG
CGCAGTCCCCTGCCGACTCCAGCTTCCTGGCAGCATCGGGACCTGGCTCGACGCCGCTGGGCGCGCTGGA
ACCGCCGCTGGCCGGGCCTCACGGCGCGGACAACCCCAGATTCACCGACATGATCTCGCATCCGGACACG
CCGAGCCCCGAGCCGGGCCTGCCCGGTGCGCTGCACCCCATGCCGGGAGAGGTGTTCAGCGGCGGGCCCA
GCCCGCCCTTCCCCATGAGCGGCACCAGCGGCTACAGTGGACCCCTGTCGCACCCCAACCCTGAGCTCAA
CGAAGCGGCCGTATGGTAA

Translation (402 aa):
MMVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQG
ISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSSSSLKEGSLNSVSSCTDRS
LSPDLQDPLQDDPKETDNSTSSDKETANNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIR
EQLAQETGLNMRVIQVWFQNRRSKERRMKQLSALGARRHAFFRSPRRMRPLGGRLDESEMLGSTPYTYYG
DYQSDYYAPGGNYDFFAHGPPSQAQSPADSSFLAASGPGSTPLGALEPPLAGPHGADNPRFTDMISHPDT
PSPEPGLPGALHPMPGEVFSGGPSPPFPMSGTSGYSGPLSHPNPELNEAAVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH