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Report for CCDS3808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3808.1 Public Homo sapiens 4 TRIM60 24 110 108 CCDS HistoryNCBI Gene:166655Re-query CCDS DB by CCDS ID:3808.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3808.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341062.6 ENSP00000343765.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341062.6Link to Ensembl Protein Viewer:ENSP00000343765.5Re-query CCDS DB by Nucleotide ID:ENST00000341062Re-query CCDS DB by Protein ID:ENSP00000343765
Original member Current member EBI ENST00000512596.6 ENSP00000421142.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000512596.6Link to Ensembl Protein Viewer:ENSP00000421142.1Re-query CCDS DB by Nucleotide ID:ENST00000512596Re-query CCDS DB by Protein ID:ENSP00000421142
Original member Current member EBI ENST00000508504.1 ENSP00000426496.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508504.1Link to Ensembl Protein Viewer:ENSP00000426496.1Re-query CCDS DB by Nucleotide ID:ENST00000508504Re-query CCDS DB by Protein ID:ENSP00000426496
Original member Current member EBI ENST00000647760.1 ENSP00000497401.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647760.1Link to Ensembl Protein Viewer:ENSP00000497401.1Re-query CCDS DB by Nucleotide ID:ENST00000647760Re-query CCDS DB by Protein ID:ENSP00000497401
Original member Current member NCBI NM_001258025.2 NP_001244954.1 Accepted alive Link to Nucleotide Sequence:NM_001258025.2Link to Protein Sequence:NP_001244954.1Re-query CCDS DB by Nucleotide ID:NM_001258025Re-query CCDS DB by Protein ID:NP_001244954Link to BLAST:NP_001244954.1
Original member Current member NCBI NM_152620.3 NP_689833.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152620.3Link to Protein Sequence:NP_689833.1Re-query CCDS DB by Nucleotide ID:NM_152620Re-query CCDS DB by Protein ID:NP_689833Link to BLAST:NP_689833.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244954.1 471 Q495X7 471 100% 0 0
NP_689833.1 471 Q495X7 471 100% 0 0

Chromosomal Locations for CCDS 3808.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 165040073 165041488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGAGTTTGTGACAGCCCTGGTGAACCTCCAAGAGGAGTCTAGCTGTCCCATCTGTCTGGAGTACTTGA
AAGACCCAGTGACCATCAACTGTGGGCACAACTTCTGTCGCTCCTGCCTCAGTGTATCCTGGAAGGATCT
AGATGATACCTTTCCCTGTCCTGTCTGCCGTTTTTGCTTTCCATACAAGAGCTTCAGGAGGAACCCCCAG
CTCCGTAATTTGACTGAAATTGCTAAACAACTCCAGATTAGGAGGAGCAAGAGAAAGAGGCAGAAAGAGA
ATGCCATGTGTGAAAAACACAACCAGTTTCTGACCCTCTTCTGTGTTAAAGATCTAGAGATCTTATGTAC
ACAGTGCAGTTTCTCCACTAAACACCAGAAGCACTACATTTGCCCTATTAAGAAAGCTGCCTCTTATCAC
AGAGAAATTCTAGAAGGTAGCCTTGAGCCCTTGAGGAATAATATAGAACGAGTTGAAAAAGTGATAATTC
TGCAAGGCAGCAAATCAGTGGAGCTGAAAAAGAAGGTAGAATATAAGAGGGAAGAAATAAATTCTGAGTT
TGAGCAAATAAGATTGTTTTTACAGAATGAACAAGAGATGATTCTTAGGCAGATACAAGATGAAGAGATG
AACATTTTAGCAAAACTAAATGAAAACCTTGTAGAACTTTCAGATTATGTTTCCACATTAAAACATCTAC
TGAGGGAGGTAGAGGGCAAGTCTGTGCAGTCAAACCTGGAATTACTGACACAAGCTAAGAGTATGCACCA
CAAGTATCAAAACCTAAAATGCCCTGAACTCTTTTCATTTAGATTAACAAAATATGGTTTCAGTCTTCCT
CCTCAATATTCTGGCTTGGACAGAATTATCAAGCCATTTCAAGTAGATGTGATTCTAGATCTCAACACAG
CACATCCTCAACTTCTTGTCTCTGAGGATAGAAAAGCTGTGCGATATGAAAGAAAAAAACGAAACATTTG
TTATGACCCAAGGAGATTTTATGTCTGCCCTGCTGTCCTAGGCTCTCAGAGATTTAGTTCTGGCCGACAT
TACTGGGAAGTAGAAGTGGGAAACAAACCTAAATGGATATTGGGTGTGTGTCAAGACTGTCTTCTTAGGA
ACTGGCAGGATCAGCCATCAGTTCTGGGCGGATTCTGGGCAATTGGGCGATACATGAAGAGTGGTTATGT
TGCGTCAGGTCCTAAGACAACCCAGCTTCTGCCAGTAGTAAAACCCAGTAAAATTGGTATTTTTCTGGAC
TATGAATTGGGTGATCTTTCCTTTTATAATATGAATGATAGGTCTATTCTCTATACTTTTAACGATTGTT
TCACAGAAGCCGTTTGGCCTTATTTCTATACTGGAACAGATTCCGAACCTCTTAAAATCTGCTCAGTATC
AGATTCTGAAAGATAA

Translation (471 aa):
MEFVTALVNLQEESSCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVCRFCFPYKSFRRNPQ
LRNLTEIAKQLQIRRSKRKRQKENAMCEKHNQFLTLFCVKDLEILCTQCSFSTKHQKHYICPIKKAASYH
REILEGSLEPLRNNIERVEKVIILQGSKSVELKKKVEYKREEINSEFEQIRLFLQNEQEMILRQIQDEEM
NILAKLNENLVELSDYVSTLKHLLREVEGKSVQSNLELLTQAKSMHHKYQNLKCPELFSFRLTKYGFSLP
PQYSGLDRIIKPFQVDVILDLNTAHPQLLVSEDRKAVRYERKKRNICYDPRRFYVCPAVLGSQRFSSGRH
YWEVEVGNKPKWILGVCQDCLLRNWQDQPSVLGGFWAIGRYMKSGYVASGPKTTQLLPVVKPSKIGIFLD
YELGDLSFYNMNDRSILYTFNDCFTEAVWPYFYTGTDSEPLKICSVSDSER


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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