NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3730.1 Public Homo sapiens 4 AFG2A 24 110 108 CCDS HistoryNCBI Gene:166378Re-query CCDS DB by CCDS ID:3730.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274008.5 ENSP00000274008.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274008.5Link to Ensembl Protein Viewer:ENSP00000274008.3Re-query CCDS DB by Nucleotide ID:ENST00000274008Re-query CCDS DB by Protein ID:ENSP00000274008
Original member Current member NCBI NM_145207.3 NP_660208.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145207.3Link to Protein Sequence:NP_660208.2Re-query CCDS DB by Nucleotide ID:NM_145207Re-query CCDS DB by Protein ID:NP_660208Link to BLAST:NP_660208.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660208.2 893 Q8NB90-1 893 100% 0 0

Chromosomal Locations for CCDS 3730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 122923143 122923305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122927634 122927758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122929040 122929197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122933439 122933497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122934097 122934738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122935714 122935843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122936100 122936156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122938126 122938249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122947233 122947488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 122979232 122979386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123028186 123028395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123056387 123056440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123057209 123057288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123090579 123090705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123256016 123256180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 123313888 123314064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2682 nt):
ATGTCTTCCAAGAAGAATAGAAAGCGGTTGAACCAAAGCGCGGAAAATGGTTCGTCCTTGCCCTCTGCTG
CTTCCTCTTGTGCGGAGGCACGGGCTCCTTCTGCTGGATCAGACTTCGCGGCAACCTCCGGGACTCTGAC
GGTGACCAACTTATTAGAAAAGGTAGATGACAAAATTCCTAAAACATTCCAGAATTCCCTTATTCATCTT
GGACTCAACACTATGAAGTCTGCAAATATATGTATAGGTCGACCAGTGTTGCTTACTAGTTTGAACGGAA
AGCAAGAGGTGTATACAGCCTGGCCTATGGCAGGATTTCCTGGAGGCAAGGTCGGCCTGAGTGAAATGGC
ACAGAAAAATGTGGGTGTGAGGCCTGGTGATGCCATCCAGGTCCAGCCTCTTGTGGGTGCTGTGCTACAG
GCTGAGGAAATGGATGTGGCACTGAGTGACAAAGATATGGAAATTAATGAAGAAGAACTGACTGGTTGTA
TCCTGAGAAAACTAGATGGCAAGATTGTTTTACCAGGCAACTTTCTGTATTGTACATTCTATGGACGACC
GTACAAGCTGCAAGTATTGCGAGTGAAAGGGGCAGATGGCATGATATTGGGAGGGCCTCAGAGTGACTCT
GACACTGATGCCCAAAGAATGGCCTTTGAACAGTCCAGCATGGAAACCAGTAGCCTGGAGTTATCCTTAC
AGCTAAGCCAGTTAGATCTGGAGGATACCCAGATCCCAACATCAAGAAGTACTCCTTATAAACCAATTGA
TGACAGAATTACAAATAAAGCCAGTGATGTTTTGCTGGATGTTACACAGAGCCCTGGAGATGGCAGTGGA
CTTATGCTAGAGGAAGTCACAGGTCTTAAATGTAATTTTGAATCTGCCAGAGAAGGAAATGAGCAACTTA
CTGAAGAAGAGAGACTGCTAAAGTTCAGCATAGGAGCAAAGTGCAATACTGATACTTTTTATTTTATTTC
TTCAACAACAAGAGTCAATTTTACAGAGATTGATAAAAATTCAAAAGAGCAAGACAACCAATTCAAAGTA
ACTTATGACATGATAGGAGGATTAAGTAGCCAGCTGAAAGCAATTAGAGAAATAATTGAATTGCCCCTCA
AACAGCCTGAGCTTTTCAAGAGTTATGGAATTCCTGCCCCTAGAGGAGTGTTACTTTATGGTCCTCCAGG
TACTGGAAAAACAATGATCGCCAGGGCTGTTGCTAATGAAGTTGGAGCCTATGTTTCTGTAATTAATGGT
CCTGAAATTATAAGCAAATTCTATGGTGAGACTGAAGCAAAGTTACGTCAGATATTTGCTGAAGCCACTC
TACGACACCCATCAATTATTTTTATTGATGAGCTGGATGCACTTTGTCCGAAAAGAGAGGGGGCCCAGAA
TGAAGTGGAAAAAAGAGTTGTGGCTTCACTCTTAACACTGATGGATGGCATTGGTTCAGAAGTAAGTGAA
GGACAAGTGTTGGTTCTTGGGGCCACAAATCGCCCTCATGCCTTGGATGCTGCTCTCCGAAGACCTGGGC
GATTTGATAAAGAGATTGAGATTGGAGTTCCCAATGCTCAGGACCGGCTAGATATTCTCCAGAAACTGCT
TCGAAGGGTACCCCATTTGCTCACTGAGGCTGAGCTGCTGCAGCTGGCAAATAGTGCTCATGGATACGTT
GGAGCAGACTTGAAAGTCTTGTGTAATGAAGCAGGTCTCTGTGCCTTGCGGAGAATCCTGAAAAAACAGC
CTAACCTCCCTGATGTCAAGGTGGCTGGACTGGTGAAGATTACTCTGAAGGATTTCTTGCAGGCAATGAA
TGATATCAGACCCAGTGCCATGAGGGAAATAGCAATTGATGTCCCAAATGTATCCTGGTCAGATATAGGA
GGACTGGAAAGTATCAAACTGAAGTTGGAACAGGCTGTGGAATGGCCCTTAAAACATCCAGAGTCTTTCA
TTCGAATGGGTATTCAGCCACCTAAAGGAGTTCTTCTCTATGGGCCACCTGGGTGCTCTAAAACAATGAT
AGCAAAGGCTTTGGCCAATGAGAGTGGACTGAATTTTCTAGCTATAAAGGGGCCTGAATTAATGAATAAA
TATGTTGGTGAATCTGAAAGAGCAGTTAGAGAGACCTTCCGAAAAGCAAGAGCAGTGGCGCCTTCCATTA
TTTTCTTTGATGAACTGGATGCCTTAGCAGTTGAAAGGGGCAGTTCTTTAGGTGCTGGGAATGTAGCCGA
TCGTGTTTTGGCTCAGCTCTTAACAGAAATGGATGGGATTGAACAGCTAAAGGATGTGACCATTTTGGCA
GCTACTAACCGTCCAGATAGGATAGACAAGGCTTTGATGCGGCCTGGAAGAATTGATAGAATCATCTATG
TGCCTTTACCGGATGCAGCAACAAGAAGGGAAATATTTAAGCTGCAGTTTCACTCCATGCCTGTCAGTAA
TGAAGTTGACCTGGATGAACTCATCCTTCAAACCGACGCATACTCAGGAGCAGAGATTGTAGCTGTCTGC
AGAGAGGCAGCTCTTCTGGCTCTGGAAGAAGACATTCAAGCCAATCTCATCATGAAAAGACATTTCACTC
AGGCCTTGAGCACTGTGACACCTAGAATTCCTGAGTCATTGAGACGTTTTTATGAAGATTATCAAGAGAA
GAGTGGGCTGCATACACTCTGA

Translation (893 aa):
MSSKKNRKRLNQSAENGSSLPSAASSCAEARAPSAGSDFAATSGTLTVTNLLEKVDDKIPKTFQNSLIHL
GLNTMKSANICIGRPVLLTSLNGKQEVYTAWPMAGFPGGKVGLSEMAQKNVGVRPGDAIQVQPLVGAVLQ
AEEMDVALSDKDMEINEEELTGCILRKLDGKIVLPGNFLYCTFYGRPYKLQVLRVKGADGMILGGPQSDS
DTDAQRMAFEQSSMETSSLELSLQLSQLDLEDTQIPTSRSTPYKPIDDRITNKASDVLLDVTQSPGDGSG
LMLEEVTGLKCNFESAREGNEQLTEEERLLKFSIGAKCNTDTFYFISSTTRVNFTEIDKNSKEQDNQFKV
TYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVANEVGAYVSVING
PEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSE
GQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYV
GADLKVLCNEAGLCALRRILKKQPNLPDVKVAGLVKITLKDFLQAMNDIRPSAMREIAIDVPNVSWSDIG
GLESIKLKLEQAVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNK
YVGESERAVRETFRKARAVAPSIIFFDELDALAVERGSSLGAGNVADRVLAQLLTEMDGIEQLKDVTILA
ATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDELILQTDAYSGAEIVAVC
REAALLALEEDIQANLIMKRHFTQALSTVTPRIPESLRRFYEDYQEKSGLHTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH