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Report for CCDS16031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16031.1 Public Mus musculus 2 Nmi 23 108 98 CCDS HistoryNCBI Gene:64685Re-query CCDS DB by CCDS ID:16031.1Re-query CCDS DB by GeneID:64685See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16031.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028314.8 ENSMUSP00000028314.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028314.8Link to Ensembl Protein Viewer:ENSMUSP00000028314.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028314Re-query CCDS DB by Protein ID:ENSMUSP00000028314
Original member Current member EBI ENSMUST00000112705.8 ENSMUSP00000108325.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112705.8Link to Ensembl Protein Viewer:ENSMUSP00000108325.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112705Re-query CCDS DB by Protein ID:ENSMUSP00000108325
Original member Current member EBI ENSMUST00000145481.7 ENSMUSP00000120647.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145481.7Link to Ensembl Protein Viewer:ENSMUSP00000120647.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145481Re-query CCDS DB by Protein ID:ENSMUSP00000120647
Original member NCBI NM_001141948.1 NP_001135420.1 Updated not alive Link to Nucleotide Sequence:NM_001141948.1Link to Protein Sequence:NP_001135420.1Re-query CCDS DB by Nucleotide ID:NM_001141948Re-query CCDS DB by Protein ID:NP_001135420
Current member NCBI NM_001141948.2 NP_001135420.1 Accepted alive Link to Nucleotide Sequence:NM_001141948.2Link to Protein Sequence:NP_001135420.1Re-query CCDS DB by Nucleotide ID:NM_001141948Re-query CCDS DB by Protein ID:NP_001135420Link to BLAST:NP_001135420.1
Original member NCBI NM_001141949.1 NP_001135421.1 Updated not alive Link to Nucleotide Sequence:NM_001141949.1Link to Protein Sequence:NP_001135421.1Re-query CCDS DB by Nucleotide ID:NM_001141949Re-query CCDS DB by Protein ID:NP_001135421
Current member NCBI NM_001141949.2 NP_001135421.1 Accepted alive Link to Nucleotide Sequence:NM_001141949.2Link to Protein Sequence:NP_001135421.1Re-query CCDS DB by Nucleotide ID:NM_001141949Re-query CCDS DB by Protein ID:NP_001135421Link to BLAST:NP_001135421.1
Original member NCBI NM_019401.2 NP_062274.1 Updated not alive Link to Nucleotide Sequence:NM_019401.2Link to Protein Sequence:NP_062274.1Re-query CCDS DB by Nucleotide ID:NM_019401Re-query CCDS DB by Protein ID:NP_062274
Current member NCBI NM_019401.3 NP_062274.1 Accepted alive Link to Nucleotide Sequence:NM_019401.3Link to Protein Sequence:NP_062274.1Re-query CCDS DB by Nucleotide ID:NM_019401Re-query CCDS DB by Protein ID:NP_062274Link to BLAST:NP_062274.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135420.1 314 O35309 314 100% 0 0
NP_001135421.1 314 O35309 314 100% 0 0
NP_062274.1 314 O35309 314 100% 0 0

Chromosomal Locations for CCDS 16031.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 51948576 51948776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51949984 51950090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51952442 51952628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51952776 51952882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51955926 51956088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51958897 51958992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 51960571 51960654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGATGCTGATAAAGACAACATAAAGCAAGCTTGTGATGAGCGCTCAGCAGAGATGGACGATATGAGAG
GCGAACAGAGCATGGGATTGGTTCATGAAATTATGAGTGAAAACAAAGAACTAGACGAGGAGATCAAAAA
ACTTGAAGCTGAATTGCAGTCGGATGCCAGAGAATTCCAAATTAAAGAGAATGTACCAGAAAAAAAGCTT
AAATTGACCTCAGTGGAGAGTCCTAAGGATGGCTGCCATTTCTCAAATAGCTCCTGTTCCTTTCAAGTGA
GCTCACAAATTCTCTATGAGCTGCAGGAAGGCCAAGCGCTCATCACCTTTGAGAAGGAAGAAGTCGCACA
AAATGTGATATCGATGGGGAATCATGTCGTGCAGATGGAAGGCACCCCAGTGAAGGTCTCTGCACACCCA
GTCCCACTAAACACAGGCGTCAGATTCCAGGTTCATGTGGACATTTCTAAAATGAAGATCAATGTTACGG
GAATTCCCGATGAGCTGTCTGAGGAGCAGACAAGGGACAAACTGGAGCTGAGCTTCTGTAAGTCCAGGAA
TGGCGGCGGCGAAGTGGAAAGCGTGGATTATGACAGGAAGTCCAGAAGCGCTGTCATCACTTTTGTGGAA
ACTGGCGTTGTTGACAAGATTTTGAAAAAGAAAACCTATCCTCTCTACATGAATCAGAAGTGCCATAGCG
TTGCTGTTTCTCCATGTATAGAACGATGCTTAGAAAAGTACCAGGTGTTTTCAGCTGTGTCCAAAAAGAC
AGTGCTTCTGACCGGATTAGAAGGCATTCCTGTAGATGAGGAGACTGGGGAGGACTTACTCAACATCCAC
TTCCAACGGAAGAATAACGGAGGGGGAGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTCCTTCGCAG
CGTATTTTAAAGAAGAGGCCAGAGAAACCATATGA

Translation (314 aa):
MDADKDNIKQACDERSAEMDDMRGEQSMGLVHEIMSENKELDEEIKKLEAELQSDAREFQIKENVPEKKL
KLTSVESPKDGCHFSNSSCSFQVSSQILYELQEGQALITFEKEEVAQNVISMGNHVVQMEGTPVKVSAHP
VPLNTGVRFQVHVDISKMKINVTGIPDELSEEQTRDKLELSFCKSRNGGGEVESVDYDRKSRSAVITFVE
TGVVDKILKKKTYPLYMNQKCHSVAVSPCIERCLEKYQVFSAVSKKTVLLTGLEGIPVDEETGEDLLNIH
FQRKNNGGGEVEVVKCSLDQSFAAYFKEEARETI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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