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Report for CCDS41558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41558.1 Public Homo sapiens 10 NKX2-3 24 110 108 CCDS HistoryNCBI Gene:159296Re-query CCDS DB by CCDS ID:41558.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344586.9 ENSP00000342828.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344586.9Link to Ensembl Protein Viewer:ENSP00000342828.7Re-query CCDS DB by Nucleotide ID:ENST00000344586Re-query CCDS DB by Protein ID:ENSP00000342828
Original member Current member NCBI NM_145285.3 NP_660328.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145285.3Link to Protein Sequence:NP_660328.2Re-query CCDS DB by Nucleotide ID:NM_145285Re-query CCDS DB by Protein ID:NP_660328Link to BLAST:NP_660328.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660328.2 364 Q8TAU0 364 100% 0 0

Chromosomal Locations for CCDS 41558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 99533132 99533489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 99534985 99535721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGATGTTACCAAGCCCGGTCACCTCCACCCCTTTCTCAGTCAAAGACATTTTGAATCTGGAGCAGCAGC
ACCAGCACTTCCATGGTGCGCACTTGCAGGCGGACTTGGAGCACCACTTCCACTCTGCGCCCTGCATGCT
GGCCGCCGCTGAGGGGACGCAATTTTCTGACGGAGGGGAGGAGGACGAGGAAGACGAGGGCGAGAAATTG
TCCTATTTGAACTCACTAGCCGCAGCAGACGGCCACGGGGATTCAGGGCTGTGTCCCCAGGGCTATGTCC
ACACGGTCCTGCGAGACTCGTGCAGCGAGCCCAAGGAACATGAAGAGGAGCCCGAGGTCGTGAGGGACCG
GAGCCAAAAAAGCTGCCAGCTGAAGAAGTCTCTAGAGACGGCCGGAGACTGCAAGGCGGCGGAGGAGAGC
GAGAGGCCGAAGCCACGCAGCCGCCGGAAGCCCCGGGTCCTCTTCTCGCAAGCCCAGGTCTTCGAGCTGG
AACGCAGGTTCAAGCAGCAGCGGTACCTGTCGGCACCCGAGCGCGAGCACCTCGCCAGCAGCCTGAAGCT
CACATCCACTCAGGTGAAAATCTGGTTCCAGAATCGCAGGTACAAGTGCAAGAGACAGCGGCAGGACAAG
TCTCTGGAGCTTGGCGCACACGCGCCCCCGCCGCCGCCGCGCCGCGTGGCTGTCCCGGTGCTGGTGCGGG
ACGGCAAGCCGTGCGTCACGCCCAGCGCGCAGGCCTACGGCGCGCCCTACAGCGTGGGCGCCAGCGCCTA
CTCCTACAACAGCTTCCCCGCCTACGGCTATGGGAACTCGGCCGCGGCCGCCGCCGCCGCCGCCGCCGCC
GCCGCAGCAGCGGCGGCCTACAGCAGCAGCTATGGCTGTGCGTACCCGGCGGGCGGCGGCGGCGGCGGCG
GCGGGACCTCCGCGGCGACCACTGCCATGCAGCCCGCCTGCAGCGCGGCCGGAGGCGGCCCCTTTGTGAA
CGTGAGCAACCTAGGAGGCTTCGGCAGCGGCGGCAGCGCACAGCCGTTGCACCAGGGTACTGCAGCCGGG
GCCGCGTGCGCTCAGGGCACCTTGCAGGGCATCCGGGCCTGGTAG

Translation (364 aa):
MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGEEDEEDEGEKL
SYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEES
ERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDK
SLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAA
AAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAAG
AACAQGTLQGIRAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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