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Report for CCDS37607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37607.1 Public Mus musculus 17 H2-T24 23 108 98 CCDS HistoryNCBI Gene:15042Re-query CCDS DB by CCDS ID:37607.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37607.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113760.9 ENSMUSP00000109389.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113760.9Link to Ensembl Protein Viewer:ENSMUSP00000109389.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113760Re-query CCDS DB by Protein ID:ENSMUSP00000109389
Original member Current member NCBI NM_008207.3 NP_032233.2 Accepted alive Link to Nucleotide Sequence:NM_008207.3Link to Protein Sequence:NP_032233.2Re-query CCDS DB by Nucleotide ID:NM_008207Re-query CCDS DB by Protein ID:NP_032233Link to BLAST:NP_032233.2

Chromosomal Locations for CCDS 37607.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36006736 36006789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36014557 36014696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36014800 36015075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36015384 36015656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36017241 36017537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36020460 36020511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGTGGGCTCTTATCTTCTGGCTTCTGAGTCACCCCCAGGACGGCGGAGCCCGGTCGCACTCTCTGCATT
ACTGTTACTCAGCTGTGACTGAGCCGGGCCCGGGAGTTCCTTCATTTTTCGCCAGTGGCTTCTTAGATAA
CCAGCCCTTCATCCACTACGACAGCAGGAGCATGAAGGCAGAGCCTTGTGCTGACTGGCTGAGGGAAAAT
GCACAGTACTTCACTCATGAGACTGAGGTTTTCACCAATCGGATGAAGATTTTCCAGTTGAGCCTGAGAA
ACATTCGGCAATACTACAACAGCTCTGGTACCCAGAGTCAGAGAGCAGATGGCTTCCGCCAGCAAGCAGG
CCCTCACACCCTCCAGTTCACATACGGCTGTGAGATGCGGTACAACAGGACCACAGGGCATTGGCAGTAT
GGCTACGATGGCAGTGATTACCTGACCTTGGACTTGGGCTCTATGCAATATATAGCAGCCACCTTCATTG
CTGGCTACACCAAGCGCAAGTGGGAAAACAATGAGTACTGGCTGGAGAAAGAGAAGACCTACTTGGAGAA
GGAGTGCATCCTATGGCTGCAGAGATACTTAACCATGGGAGGAAAGAACTTTACCCGAACTGACCCTCCA
AAGACAACAGTGACTCATCAGTTCAAACCTAAAGAAAACGTCACCCTGAGGTGCTGGGCCCTGGGCTTCT
ACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGAGAGGAGCTGACCCAGGACACGGAGCTTGTGGA
GACGAGGCCTTCAGGGGATGGGACATTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAG
AGATACACATGTCATGTGCAACATGAGGCACTAACGCAGCCCCTTGTTCTGAAATGGGAGCCTCTTCAGC
TCACCACGCCCACGACAGGAGTATATGCTAGGGGAAGCTGTAGTCCTCAAGCAACCTTGCTGAGTGTCCT
TGCGTTTCCTTTATTTGGCATAGTACTTGTGTTTGGACTTACCCGCTACAAAACTCAGGTCAGAAGAAAG
AACTGGCCTGCTCCATCTGTTCCTGAAGAAGAGAGGCTCTAG

Translation (363 aa):
MWALIFWLLSHPQDGGARSHSLHYCYSAVTEPGPGVPSFFASGFLDNQPFIHYDSRSMKAEPCADWLREN
AQYFTHETEVFTNRMKIFQLSLRNIRQYYNSSGTQSQRADGFRQQAGPHTLQFTYGCEMRYNRTTGHWQY
GYDGSDYLTLDLGSMQYIAATFIAGYTKRKWENNEYWLEKEKTYLEKECILWLQRYLTMGGKNFTRTDPP
KTTVTHQFKPKENVTLRCWALGFYPADITLTWQLNGEELTQDTELVETRPSGDGTFQKWAAVVVPSGEEQ
RYTCHVQHEALTQPLVLKWEPLQLTTPTTGVYARGSCSPQATLLSVLAFPLFGIVLVFGLTRYKTQVRRK
NWPAPSVPEEERL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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