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Report for CCDS13158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13158.1 Public Homo sapiens 20 CST3 24 110 108 CCDS HistoryNCBI Gene:1471Re-query CCDS DB by CCDS ID:13158.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376925.8 ENSP00000366124.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376925.8Link to Ensembl Protein Viewer:ENSP00000366124.3Re-query CCDS DB by Nucleotide ID:ENST00000376925Re-query CCDS DB by Protein ID:ENSP00000366124
Original member Current member EBI ENST00000398409.1 ENSP00000381446.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398409.1Link to Ensembl Protein Viewer:ENSP00000381446.1Re-query CCDS DB by Nucleotide ID:ENST00000398409Re-query CCDS DB by Protein ID:ENSP00000381446
Original member Current member EBI ENST00000398411.5 ENSP00000381448.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398411.5Link to Ensembl Protein Viewer:ENSP00000381448.1Re-query CCDS DB by Nucleotide ID:ENST00000398411Re-query CCDS DB by Protein ID:ENSP00000381448
Original member Current member NCBI NM_000099.4 NP_000090.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000099.4Link to Protein Sequence:NP_000090.1Re-query CCDS DB by Nucleotide ID:NM_000099Re-query CCDS DB by Protein ID:NP_000090Link to BLAST:NP_000090.1
Original member Current member NCBI NM_001288614.2 NP_001275543.1 Accepted alive Link to Nucleotide Sequence:NM_001288614.2Link to Protein Sequence:NP_001275543.1Re-query CCDS DB by Nucleotide ID:NM_001288614Re-query CCDS DB by Protein ID:NP_001275543Link to BLAST:NP_001275543.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000090.1 146 P01034 146 100% 0 0
NP_001275543.1 146 P01034 146 100% 0 0

Chromosomal Locations for CCDS 13158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23633916 23633999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23635254 23635367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23637620 23637862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGCCGGGCCCCTGCGCGCCCCGCTGCTCCTGCTGGCCATCCTGGCCGTGGCCCTGGCCGTGAGCCCCG
CGGCCGGCTCCAGTCCCGGCAAGCCGCCGCGCCTAGTGGGAGGCCCCATGGACGCCAGCGTGGAGGAGGA
GGGTGTGCGGCGTGCACTGGACTTTGCCGTCGGCGAGTACAACAAAGCCAGCAACGACATGTACCACAGC
CGCGCGCTGCAGGTGGTGCGCGCCCGCAAGCAGATCGTAGCTGGGGTGAACTACTTCTTGGACGTGGAGC
TGGGCCGAACCACGTGTACCAAGACCCAGCCCAACTTGGACAACTGCCCCTTCCATGACCAGCCACATCT
GAAAAGGAAAGCATTCTGCTCTTTCCAGATCTACGCTGTGCCTTGGCAGGGCACAATGACCTTGTCGAAA
TCCACCTGTCAGGACGCCTAG

Translation (146 aa):
MAGPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEYNKASNDMYHS
RALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSK
STCQDA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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