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Report for CCDS41852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41852.1 Public Homo sapiens 12 TMEM120B 24 110 108 CCDS HistoryNCBI Gene:144404Re-query CCDS DB by CCDS ID:41852.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342607.10 ENSP00000345152.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342607.10Link to Ensembl Protein Viewer:ENSP00000345152.6Re-query CCDS DB by Nucleotide ID:ENST00000342607Re-query CCDS DB by Protein ID:ENSP00000345152
Original member Current member EBI ENST00000449592.7 ENSP00000404991.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000449592.7Link to Ensembl Protein Viewer:ENSP00000404991.2Re-query CCDS DB by Nucleotide ID:ENST00000449592Re-query CCDS DB by Protein ID:ENSP00000404991
Original member Current member NCBI NM_001080825.2 NP_001074294.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080825.2Link to Protein Sequence:NP_001074294.2Re-query CCDS DB by Nucleotide ID:NM_001080825Re-query CCDS DB by Protein ID:NP_001074294Link to BLAST:NP_001074294.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074294.2 339 A0PK00 339 100% 0 0

Chromosomal Locations for CCDS 41852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 121712896 121712964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121743629 121743747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121748326 121748442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121750380 121750439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121752128 121752223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121761649 121761738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121770907 121770972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121771488 121771549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121773421 121773513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121774658 121774722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121775062 121775130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 121775609 121775722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGTCCGGGCAGCTGGAGCGTTGCGAGCGCGAATGGCACGAGCTGGAGGGAGAATTTCAAGAACTGCAGG
AGACGCACAGGATCTACAAGCAGAAGCTGGAGGAGCTGGCTGCGCTGCAGACGCTGTGTAGCAGTTCCAT
CAGTAAGCAGAAGAAGCACCTCAAGGACTTGAAGCTTACACTCCAGAGGTGCAAACGCCATGCCAGTCGG
GAGGAGGCGGAGCTCGTTCAGCAGATGGCAGCGAACATCAAGGAGCGGCAGGACGTCTTCTTCGACATGG
AGGCCTACCTGCCCAAGAAGAACGGGCTCTACTTGAACCTGGTCCTCGGCAATGTGAACGTGACCCTCCT
CAGCAACCAGGCCAAGTTCGCCTACAAGGACGAATATGAGAAGTTCAAGCTCTACCTGACCATCATCCTG
CTCCTGGGTGCCGTGGCATGTCGATTTGTCCTTCACTACAGGGTGACTGACGAAGTCTTCAACTTCCTGC
TGGTGTGGTATTACTGCACCCTGACCATTCGGGAGAGCATTCTCATCAGCAACGGCTCAAGAATTAAAGG
CTGGTGGGTGTCTCACCACTACGTCTCCACATTCCTGTCCGGAGTGATGCTGACCTGGCCTAATGGACCC
ATTTATCAGAAGTTTCGCAACCAGTTCTTAGCATTTTCCATTTTTCAGAGCTGCGTCCAGTTCCTGCAAT
ATTATTACCAGAGGGGCTGCCTCTACCGGCTGCGGGCCCTGGGGGAGAGGAACCACCTGGATCTCACAGT
GGAAGGGTTCCAGTCCTGGATGTGGCGGGGCCTCACCTTTCTCCTGCCCTTCCTCTTCTGTGGCCATTTC
TGGCAGCTCTACAATGCCGTCACGCTGTTTGAGCTCTCCAGCCACGAGGAATGCAGAGAATGGCAGGTGT
TCGTACTGGCGTTCACCTTCCTCATCCTCTTCCTCGGCAACTTCCTGACCACGCTCAAAGTCGTGCATGC
CAAGCTCCAGAAGAACAGAGGCAAGACAAAGCAGCCGTGA

Translation (339 aa):
MSGQLERCEREWHELEGEFQELQETHRIYKQKLEELAALQTLCSSSISKQKKHLKDLKLTLQRCKRHASR
EEAELVQQMAANIKERQDVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKDEYEKFKLYLTIIL
LLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWVSHHYVSTFLSGVMLTWPNGP
IYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHF
WQLYNAVTLFELSSHEECREWQVFVLAFTFLILFLGNFLTTLKVVHAKLQKNRGKTKQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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