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Report for CCDS40653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40653.1 Public Mus musculus 9 Cyp11a1 23 108 98 CCDS HistoryNCBI Gene:13070Re-query CCDS DB by CCDS ID:40653.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034874.13 ENSMUSP00000034874.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034874.13Link to Ensembl Protein Viewer:ENSMUSP00000034874.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034874Re-query CCDS DB by Protein ID:ENSMUSP00000034874
Original member Current member NCBI NM_019779.4 NP_062753.3 Accepted alive Link to Nucleotide Sequence:NM_019779.4Link to Protein Sequence:NP_062753.3Re-query CCDS DB by Nucleotide ID:NM_019779Re-query CCDS DB by Protein ID:NP_062753Link to BLAST:NP_062753.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062753.3 526 Q9QZ82 526 100% 0 0

Chromosomal Locations for CCDS 40653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 58015039 58015298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58016274 58016429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58018194 58018393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58019293 58019496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58020709 58020866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58025078 58025244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58025528 58025606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58026085 58026282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 58026694 58026852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGCTGGCTAAAGGACTTTCCCTGCGCTCAGTGCTGGTCAAAGGCTGCCAACCTTTCCTGAGCCCTACGT
GGCAGGGTCCAGTGCTGAGTACTGGAAAGGGAGCTGGTACCTCTACTAGCAGTCCTAGGTCCTTCAATGA
GATCCCTTCCCCTGGCGACAATGGTTGGCTAAACCTGTACCACTTCTGGAGGGAGAGTGGCACACAGAAA
ATCCATTACCATCAGATGCAGAGTTTCCAAAAGTATGGCCCCATTTACAGGGAGAAGCTGGGCACTTTGG
AGTCAGTTTACATCGTGGACCCCAAGGATGCGTCGATACTCTTCTCATGCGAGGGTCCCAACCCGGAGCG
GTTCCTTGTGCCCCCCTGGGTGGCCTATCACCAGTATTATCAGAGGCCCATTGGGGTCCTGTTTAAGAGT
TCAGATGCCTGGAAGAAAGACCGAATCGTCCTAAACCAAGAGGTGATGGCGCCTGGAGCCATCAAGAACT
TCGTGCCCCTGCTGGAAGGTGTAGCTCAGGACTTCATCAAAGTCTTACACAGACGCATCAAGCAGCAAAA
TTCTGGAAATTTCTCAGGGGTCATCAGTGATGACCTATTCCGCTTTTCCTTTGAGTCCATCAGCAGTGTT
ATATTTGGGGAGCGCATGGGGATGCTGGAGGAGATCGTGGATCCCGAGGCCCAGCGGTTCATCAATGCTG
TCTACCAGATGTTCCACACCAGTGTCCCCATGCTCAACCTGCCTCCAGACTTCTTTCGACTCCTCAGAAC
TAAGACCTGGAAGGACCATGCAGCTGCCTGGGATGTGATTTTCAATAAAGCTGATGAGTACACCCAGAAC
TTCTACTGGGACTTAAGGCAGAAGCGAGACTTCAGCCAGTACCCTGGTGTCCTTTATAGCCTCCTGGGGG
GCAACAAGCTGCCCTTCAAGAACATCCAGGCCAACATTACCGAGATGCTGGCAGGAGGGGTGGACACGAC
CTCCATGACCCTGCAGTGGAACCTTTATGAGATGGCACACAACTTGAAGGTACAGGAGATGCTGCGGGCT
GAAGTCCTGGCTGCCCGGCGCCAGGCCCAGGGAGACATGGCCAAGATGGTACAGTTGGTTCCACTCCTCA
AAGCCAGCATCAAGGAGACACTGAGACTCCACCCCATCTCCGTGACCTTGCAGAGGTACACTGTGAATGA
CCTGGTGCTTCGTAATTACAAGATTCCAGCCAAGACTTTGGTACAGGTGGCTAGCTTTGCCATGGGTCGA
GATCCGGGCTTCTTTCCCAATCCAAACAAGTTTGACCCAACTCGTTGGCTGGAAAAAAGCCAAAATACCA
CCCACTTCCGGTACTTGGGCTTTGGCTGGGGTGTTCGGCAGTGTCTGGGCCGGCGGATTGCGGAGCTGGA
GATGACCATCCTCCTTATCAATCTGCTGGAGAACTTCAGAATTGAAGTTCAAAATCTCCGTGATGTGGGG
ACCAAGTTCAGCCTCATCCTGATGCCTGAGAACCCCATCCTCTTCAACTTCCAGCCTCTCAAGCAGGACC
TGGGCCCAGCCGTGACCAGAAAAGACAACACTGTGAACTGA

Translation (526 aa):
MLAKGLSLRSVLVKGCQPFLSPTWQGPVLSTGKGAGTSTSSPRSFNEIPSPGDNGWLNLYHFWRESGTQK
IHYHQMQSFQKYGPIYREKLGTLESVYIVDPKDASILFSCEGPNPERFLVPPWVAYHQYYQRPIGVLFKS
SDAWKKDRIVLNQEVMAPGAIKNFVPLLEGVAQDFIKVLHRRIKQQNSGNFSGVISDDLFRFSFESISSV
IFGERMGMLEEIVDPEAQRFINAVYQMFHTSVPMLNLPPDFFRLLRTKTWKDHAAAWDVIFNKADEYTQN
FYWDLRQKRDFSQYPGVLYSLLGGNKLPFKNIQANITEMLAGGVDTTSMTLQWNLYEMAHNLKVQEMLRA
EVLAARRQAQGDMAKMVQLVPLLKASIKETLRLHPISVTLQRYTVNDLVLRNYKIPAKTLVQVASFAMGR
DPGFFPNPNKFDPTRWLEKSQNTTHFRYLGFGWGVRQCLGRRIAELEMTILLINLLENFRIEVQNLRDVG
TKFSLILMPENPILFNFQPLKQDLGPAVTRKDNTVN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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