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Report for CCDS26551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26551.1 Public Mus musculus 13 Caml 23 108 98 CCDS HistoryNCBI Gene:12328Re-query CCDS DB by CCDS ID:26551.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021963.4 ENSMUSP00000021963.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021963.4Link to Ensembl Protein Viewer:ENSMUSP00000021963.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021963Re-query CCDS DB by Protein ID:ENSMUSP00000021963
Original member Current member NCBI NM_007596.2 NP_031622.2 Accepted alive Link to Nucleotide Sequence:NM_007596.2Link to Protein Sequence:NP_031622.2Re-query CCDS DB by Nucleotide ID:NM_007596Re-query CCDS DB by Protein ID:NP_031622Link to BLAST:NP_031622.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031622.2 294 P49070 294 100% 0 0

Chromosomal Locations for CCDS 26551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55623091 55623256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55624711 55625171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55628577 55628642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55631809 55632000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGAGCCGGTGCCTGCGGCCACGGACGGCGGGGAAAGACCCGCGACGCCGTCGGGCCTGTCGGCTTCTC
AGCGGCGAGCGGAGCTGCGGAGGAGAAAGCTGCTCATGAACTCCGAGCAACGCATCAACCGGATCATGGG
CTTTCACAGGCCCGGGAGCGGCTCGGAAGAAGAAAATCAAACAAAATCAAAGCCACAGGACAGTGACAAA
CTGAACTCCCTCAGCATCCCTTCAGTTTCAAAGAGGGTAGTGCTTGGTGATTCAGTCGATGGAGGAGGAG
CTGACCAGCTCGGTGGTGTGGCAGAAGTCAGGGGAACCCAGCTGGGAGACAAACTGGACTCATTCATTAA
AGCACCAGAGTGCAGTAGTAAGGATGGAGCTGAGCTCCGGCAGCGGACCAGAGGTGACCTGACAGCAGAC
CCGGCCCAGAGGGCTTCTCACCACGGCCTAGAACAGTACCTTTCCAGATTCGAAGAAGCGATGAAGTTGC
GCAAACAGCTGATCAGCGAGAAACCCAGCCAGGAAGATGGAAGTACCGCGGAAGAGTTTGACTCTTTTCG
AATATTTCGATTGGTGGGGTGCGCTCTGCTCGCTCTTGGCGTCAGAGCCTTTGTTTGCAAATATTTGTCT
ATATTCGCTCCATTTCTCACTTTGCAGCTTGCATACATGGGACTATACAAATATTTTCCTAAGGGCGAGA
AGAAGGTGAAGACGACGGTGCTGACAGCTGCGCTGTTGCTGTCTGGGATTCCCGCTGAGGTGATCAACCG
GTCCATGGACACCTACAGCAAGATGGGCGAGGTCTTCACGGACCTCTGCGTCTACTTCTTCACCTTCATT
TTCTGTCATGAACTGCTTGATTACTGGGGTCCTGAAGTACCCTGA

Translation (294 aa):
MEPVPAATDGGERPATPSGLSASQRRAELRRRKLLMNSEQRINRIMGFHRPGSGSEEENQTKSKPQDSDK
LNSLSIPSVSKRVVLGDSVDGGGADQLGGVAEVRGTQLGDKLDSFIKAPECSSKDGAELRQRTRGDLTAD
PAQRASHHGLEQYLSRFEEAMKLRKQLISEKPSQEDGSTAEEFDSFRIFRLVGCALLALGVRAFVCKYLS
IFAPFLTLQLAYMGLYKYFPKGEKKVKTTVLTAALLLSGIPAEVINRSMDTYSKMGEVFTDLCVYFFTFI
FCHELLDYWGPEVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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