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Report for CCDS28105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28105.1 Public Mus musculus 16 Apod 23 108 98 CCDS HistoryNCBI Gene:11815Re-query CCDS DB by CCDS ID:28105.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115230.1 ENSMUSP00000110885.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115230.1Link to Ensembl Protein Viewer:ENSMUSP00000110885.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115230Re-query CCDS DB by Protein ID:ENSMUSP00000110885
Original member Current member EBI ENSMUST00000130560.7 ENSMUSP00000119827.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130560.7Link to Ensembl Protein Viewer:ENSMUSP00000119827.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130560Re-query CCDS DB by Protein ID:ENSMUSP00000119827
Original member Current member NCBI NM_001301353.1 NP_001288282.1 Accepted alive Link to Nucleotide Sequence:NM_001301353.1Link to Protein Sequence:NP_001288282.1Re-query CCDS DB by Nucleotide ID:NM_001301353Re-query CCDS DB by Protein ID:NP_001288282Link to BLAST:NP_001288282.1
Original member Current member NCBI NM_001301354.1 NP_001288283.1 Accepted alive Link to Nucleotide Sequence:NM_001301354.1Link to Protein Sequence:NP_001288283.1Re-query CCDS DB by Nucleotide ID:NM_001301354Re-query CCDS DB by Protein ID:NP_001288283Link to BLAST:NP_001288283.1
Original member Current member NCBI NM_007470.4 NP_031496.2 Accepted alive Link to Nucleotide Sequence:NM_007470.4Link to Protein Sequence:NP_031496.2Re-query CCDS DB by Nucleotide ID:NM_007470Re-query CCDS DB by Protein ID:NP_031496Link to BLAST:NP_031496.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288282.1 189 P51910 189 100% 0 0
NP_001288283.1 189 P51910 189 100% 0 0
NP_031496.2 189 P51910 189 100% 0 0

Chromosomal Locations for CCDS 28105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31297341 31297576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31300395 31300483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31303410 31303531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31311014 31311136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGTGACCATGCTGATGTTCCTGGCCACGCTGGCGGGTCTCTTCACCACAGCCAAAGGACAAAATTTCC
ATCTTGGGAAATGCCCGTCTCCTCCTGTGCAAGAGAATTTTGACGTGAAAAAGTATCTTGGAAGATGGTA
CGAAATTGAGAAGATCCCAGCGAGCTTTGAGAAAGGAAACTGCATTCAAGCCAACTACTCGCTGATGGAG
AACGGAAACATCGAAGTGCTAAACAAGGAGCTGAGTCCTGATGGAACCATGAACCAAGTAAAGGGTGAAG
CCAAACAGAGCAACGTCTCAGAGCCAGCCAAGCTGGAAGTCCAGTTCTTCCCGTTGATGCCACCGGCACC
CTACTGGATCCTGGCCACCGATTATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTC
TTCCATGTGGATTTTGTTTGGATTCTTGGAAGAAATCCTTATCTCCCTCCAGAAACAATAACCTACCTAA
AAGATATCCTTACTTCTAATGGCATCGACATCGAAAAAATGACAACAACAGATCAAGCGAACTGCCCGGA
CTTCCTGTAA

Translation (189 aa):
MVTMLMFLATLAGLFTTAKGQNFHLGKCPSPPVQENFDVKKYLGRWYEIEKIPASFEKGNCIQANYSLME
NGNIEVLNKELSPDGTMNQVKGEAKQSNVSEPAKLEVQFFPLMPPAPYWILATDYENYALVYSCTTFFWL
FHVDFVWILGRNPYLPPETITYLKDILTSNGIDIEKMTTTDQANCPDFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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