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Report for CCDS23997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23997.1 Public Mus musculus 10 R3hdm4 23 108 98 CCDS HistoryNCBI Gene:109284Re-query CCDS DB by CCDS ID:23997.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045628.14 ENSMUSP00000044570.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045628.14Link to Ensembl Protein Viewer:ENSMUSP00000044570.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045628Re-query CCDS DB by Protein ID:ENSMUSP00000044570
Original member Current member EBI ENSMUST00000171416.1 ENSMUSP00000132266.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171416.1Link to Ensembl Protein Viewer:ENSMUSP00000132266.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171416Re-query CCDS DB by Protein ID:ENSMUSP00000132266
Original member NCBI NM_177994.4 NP_818775.2 Updated not alive Link to Nucleotide Sequence:NM_177994.4Link to Protein Sequence:NP_818775.2Re-query CCDS DB by Nucleotide ID:NM_177994Re-query CCDS DB by Protein ID:NP_818775
Current member NCBI NM_177994.5 NP_818775.2 Accepted alive Link to Nucleotide Sequence:NM_177994.5Link to Protein Sequence:NP_818775.2Re-query CCDS DB by Nucleotide ID:NM_177994Re-query CCDS DB by Protein ID:NP_818775Link to BLAST:NP_818775.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_818775.2 262 Q4VBF2 262 100% 0 0

Chromosomal Locations for CCDS 23997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79911039 79911139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79911942 79911997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79912075 79912160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79912396 79912481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79912649 79912769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79913225 79913346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79913557 79913711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79916823 79916884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGTGGCTCTGGACAACTCAGAAGGCGGCCCGGAGGCTACCCCGAGCGGGGAGACCAGGCTGTCCCTCC
CTGGCTGTCTCCCCCCACTCAGCGGCTCACAGGTGAAGAGGGTCTCAGCGTCCAGACGCAAGCAGCATTT
TATCAACCAGGCTGTGAGGAATTCGGACCTGGTGCCCAGAGCTAAGGGACGGAAGAGTCTGCAGCGTTTG
GAGAATACCCAGTACCTGCTAACACTGCTGGAGACCGCTGGGGGCCCTCCAGGGGTGGAAGATGGGGACC
TGACTCCTGCTGCACCTGGCATCTTCGCAGAGGCCTGCAGCAATGCCACCTATGTGGAGGTCTGGAATGA
TTTTATGAACCGCTCGGGAGAGGAGCAAGAGCGAGTGCTCCGTTACTTGGAGGATGAGAGCCAGGGCAAG
CGGAGACGTGGGCCTGGCCGTGGGGAGGACCGACGGAGAGAGGACCCTGTCTTCACACCCCACGAGTGCT
TCAGGCGCATCAGCCGTCGCCTGCGGTCCGTGCTCAAGCGCAGCCGCATCCCAATGGAAACCCTGGAGAG
TTGGGAGGAACGGCTGCTGGCGTTCTTCTCGGTGTCCCCCCAAGCTGTGTACACCGCTATGCTGGACAAC
AGCTATGAGAGGCTCCTGCTTCATGCTGTGTGCCAATACATGGATCTCATCTCAGCCAGTGCTGACCTGG
AGGGCCGGAGGCAGATGAAAGTCAGCAACCGCCACCTGGATTTCCTGCCTCCAGAGCTTCTGTTGTCTGC
CTACCTGGACCAGCAATGA

Translation (262 aa):
MVALDNSEGGPEATPSGETRLSLPGCLPPLSGSQVKRVSASRRKQHFINQAVRNSDLVPRAKGRKSLQRL
ENTQYLLTLLETAGGPPGVEDGDLTPAAPGIFAEACSNATYVEVWNDFMNRSGEEQERVLRYLEDESQGK
RRRGPGRGEDRRREDPVFTPHECFRRISRRLRSVLKRSRIPMETLESWEERLLAFFSVSPQAVYTAMLDN
SYERLLLHAVCQYMDLISASADLEGRRQMKVSNRHLDFLPPELLLSAYLDQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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