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Report for CCDS39967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39967.1 Public Mus musculus 7 E2f8 23 108 98 CCDS HistoryNCBI Gene:108961Re-query CCDS DB by CCDS ID:39967.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058745.14 ENSMUSP00000056778.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058745.14Link to Ensembl Protein Viewer:ENSMUSP00000056778.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058745Re-query CCDS DB by Protein ID:ENSMUSP00000056778
Original member Current member EBI ENSMUST00000119223.1 ENSMUSP00000112883.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119223.1Link to Ensembl Protein Viewer:ENSMUSP00000112883.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119223Re-query CCDS DB by Protein ID:ENSMUSP00000112883
Original member Current member NCBI NM_001013368.5 NP_001013386.2 Accepted alive Link to Nucleotide Sequence:NM_001013368.5Link to Protein Sequence:NP_001013386.2Re-query CCDS DB by Nucleotide ID:NM_001013368Re-query CCDS DB by Protein ID:NP_001013386Link to BLAST:NP_001013386.2
Original member Current member NCBI NM_001360812.1 NP_001347741.1 Accepted alive Link to Nucleotide Sequence:NM_001360812.1Link to Protein Sequence:NP_001347741.1Re-query CCDS DB by Nucleotide ID:NM_001360812Re-query CCDS DB by Protein ID:NP_001347741Link to BLAST:NP_001347741.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013386.2 860 Q58FA4 860 100% 0 0
NP_001347741.1 860 Q58FA4 860 100% 0 0

Chromosomal Locations for CCDS 39967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 48867047 48867229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48867654 48868039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48868159 48868291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48870691 48871216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48871813 48871900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48872086 48872286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48873260 48873397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48874972 48875133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48875457 48875771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48877942 48878098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48878425 48878703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 48880278 48880292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGGAGAACCAAAAGGAAAACCTCTTTTCTGAGCCACATAAAAGGGGACTGATGAAAAGCCCCCTGCATC
CGTCCTCGAAGGCCAACATGGTGTTGGCTGAGATCCAGCCTGACTTGGGCCCTCTAACCACACCAACCAA
GCCCAAGGAAGTCTCCCAAGGAGAGCCATGGACACCCACAGCCAACCTGAAAATGCTCATCAGCGCCGTG
AGCCCCGAGATCCGAAGTCGAGATCAGAAAAGGGGCCTGTCTGACAACCGAAGTGCATTACCTGAAGCTA
GAGACTGTTTGCACGAACACTTATCAGGAGACGAATTTGAGAAATCCCAGCCGAGTCGGAAGGAGAAGAG
CTTGGGGTTGCTATGCCACAAATTCCTAGCGCGGTACCCCAAGTACCCCAACCCTGCTGTGAATAACGAC
ATCTGCCTGGACGAGGTGGCCGAGGAGCTCAATGTTGAACGTCGGCGGATTTATGACATTGTGAATGTCC
TAGAGAGCCTGCACATGGTGAGCCGCCTTGCCAAAAACAGGTACACTTGGCATGGCCGGCACAACCTCAC
CAAAACCCTCGGGACGCTGAAGAGTGTCGGGGAAGAGAACAAGTACGCTGAGCAGATCATGATGATCAAA
AGGAAAGAATATGAGCAAGAGTTTGATTTTATCAAGAGCTGTGGCATAGAGGACCACGTGATCAAGTCAC
ACACTGGCCAGAATGGGCATTCAGACATGTGCTTCGTAGAACTCCCTGGAGTAGAATTCCGGGCAGCTTC
TGTAAACAGCCGCAAAGACAAGTCCTTACGCGTGATGAGCCAGAAGTTTGTGATGCTGTTCTTGGTGTCG
ACGCCTCAGATAGTGAGCCTGGAAATTGCTGCCAAGATTTTAATTGGGGAAGACCACGTGGAAGATCTGG
ATAAAAGCAAGTATAAAACAAAAATTAGGAGGCTGTATGACATTGCTAATGTCCTGAGTAGCTTGGATCT
TATCAAGAAAGTCCATGTTACAGAAGAAAGAGGTCGAAAACCAGCTTTTAAATGGACGGGCCCAGAAATC
AGCCCAAACAACAGTGGTTCCAGCCCCATCATGCCTCTTCCTGCCTCCTTAGAGGCTGAGCAGTCTGCAA
AAGAGAACTGTGCCAAAAACCTCTTCTCTACGCGGGGGAAACCCAGCTTCACTCGACACCCGTCCCTCAT
CAAGTTGGTAAAGAGCATAGAAAATGATCGGAGGAAGATCAGTTCCGCTCCCAGCAGCCCTGTCAAGAGC
AACAAAGCTGAGAGTTCTCAAAATTCTCCACCCGTCCCAAACAAAATGGCTCAGCTCGCCGCTATTTGCA
AGATGCAGTTGGAAGAGCAGTCAAGTGAACCCAGGAAGAAAGTGAAAGTAAACCTAGCAAGATCTGGGCA
CTACAAACCACTGGCTCCCCTGGACCCTACAGTGAACACTGAGCTAGAACTGCTTACACCGTCCCTTATC
CAGCCCCTGGGCGTGGTCCCCCTGATCCCTAGCCCATTGTCATCTGCAGTGCCTGTGATCCTACCTCAGG
CCCCTTCGGGCCCATCCTATGCCATCTACTTACAACCTGCCCAAGCCCAAATGTTGACACCACCCCCTGG
CCTGAGCCCAACCGTCTGCCCCACCCAGCCCTCTAATGCTACTGGATCCAAAGACCCTACAGACGCCCCT
GCTGAGAAGACGGCCACAGACGCCGCCACAACCGGAAGCTTGCAGCCAGCACCAGAAAGGCATGGTGCTA
AGCATCGAAGCAAGGAGACGACCGGAGATCGGGGTACAAAGAGGATGATCACCGCGGAGGACAGTGGTCC
CAGTTCTGTAAAGAAACCTAAAGAGGACCTGAAAGCGCTTGAGAACGTCCCCACCCCCACGCCCCTGTTC
CCATCAGGATACCTAATCCCTCTTACCCAGTGCTCATCCCTAGGGCCAGACTCTGTGTTGTCTAACACTG
AAAACTCAGGTACACCCTCTCCAAACCACCGGATCTATGGCTCCCCCATTGCAGGTGTGATCCCAGTGGC
ATCATCGGAACTCACTGCTGTGAATTTTCCCCCATTCCATGTGACACCTCTGAAACTTATGGTCTCCCCA
ACATCTATGGCGGCCGTACCTGTTGGGAACAGCCCAGCCCTCAACTCCGGCCACCCTGCTCCCGCCCAGA
ACCCAAGCTCGGCTATCGTAAACTTTACCCTGCAGCACTTGGGACTCATCTCCCCGGGCGTGCAGATGTC
TGCCAGCCCGGGGCCTGGAGCTGGCACAGTCCCGGTATCCCCACGTGTAGAAGCAGATAACTTGAGCTCT
CGGCAAAGGAGGGCCACCAACCATGACTCGCCAGTCCTGGGCCAGAGCCAACTAAACGGACAACCAGTCG
CGGGGACAGGGGCACAGCAGCCTGTTCCTGTGACACCCAAAGGCTCCCAGTTGGTGGCTGAAAATTTCTT
CCGTACTCCGGGTGGACCAACTAAGCCTACCAGCTCACCCTACACAGATTTCGATGGTGCTAACAAAACC
TCCTTCGGAACCCTCTTTGTCCCACAGCGCAAACTGGAAGTCTCAACTGAGGATATCCACTGA

Translation (860 aa):
MENQKENLFSEPHKRGLMKSPLHPSSKANMVLAEIQPDLGPLTTPTKPKEVSQGEPWTPTANLKMLISAV
SPEIRSRDQKRGLSDNRSALPEARDCLHEHLSGDEFEKSQPSRKEKSLGLLCHKFLARYPKYPNPAVNND
ICLDEVAEELNVERRRIYDIVNVLESLHMVSRLAKNRYTWHGRHNLTKTLGTLKSVGEENKYAEQIMMIK
RKEYEQEFDFIKSCGIEDHVIKSHTGQNGHSDMCFVELPGVEFRAASVNSRKDKSLRVMSQKFVMLFLVS
TPQIVSLEIAAKILIGEDHVEDLDKSKYKTKIRRLYDIANVLSSLDLIKKVHVTEERGRKPAFKWTGPEI
SPNNSGSSPIMPLPASLEAEQSAKENCAKNLFSTRGKPSFTRHPSLIKLVKSIENDRRKISSAPSSPVKS
NKAESSQNSPPVPNKMAQLAAICKMQLEEQSSEPRKKVKVNLARSGHYKPLAPLDPTVNTELELLTPSLI
QPLGVVPLIPSPLSSAVPVILPQAPSGPSYAIYLQPAQAQMLTPPPGLSPTVCPTQPSNATGSKDPTDAP
AEKTATDAATTGSLQPAPERHGAKHRSKETTGDRGTKRMITAEDSGPSSVKKPKEDLKALENVPTPTPLF
PSGYLIPLTQCSSLGPDSVLSNTENSGTPSPNHRIYGSPIAGVIPVASSELTAVNFPPFHVTPLKLMVSP
TSMAAVPVGNSPALNSGHPAPAQNPSSAIVNFTLQHLGLISPGVQMSASPGPGAGTVPVSPRVEADNLSS
RQRRATNHDSPVLGQSQLNGQPVAGTGAQQPVPVTPKGSQLVAENFFRTPGGPTKPTSSPYTDFDGANKT
SFGTLFVPQRKLEVSTEDIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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