Positioning of TAATA

From Table IVb: Position-dependent pentamers: Clustered pentamers
TAATA
is found in the upstream regions of these
late_g1
yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
9 elements found in 9 genes

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL156W		
```

YFL008W	SMC1	omosome segregation protein

YIL026C	IRR1	involved in cell morphology

YIL159W	BNR1	involved in actin filament organization

```
YJL181W		
```

YLL022C	HIF1	interacts with histone acetyltransferase

```
YLR183C		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

-501 to -550 nt upstream of the ATG start codon
5 elements found in 5 genes

```
YBR071W		
```

YKL165C	MCD4	(putative) involved in cell polarity

```
YLR183C		
```

YML027W	YOX1	Homeobox-domain containing protein

```
YCL061C		
```

-451 to -500 nt upstream of the ATG start codon
9 elements found in 8 genes

```
YCL022C		
```
```
YDL119C		
```

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

YGR041W	BUD9	involved in bud-site selection

YLL022C	HIF1	interacts with histone acetyltransferase

```
YLR326W		
```

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL273W	TOF1	Interacts with topoisomerase I

-401 to -450 nt upstream of the ATG start codon
11 elements found in 10 genes

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YBR071W		
```
```
YCL024W		Ser/Thr protein kinase
```
```
YDL105W	QRI2	
```
```
YDR383C		
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YJL196C	ELO1	Elongation enzyme 1
```

YKL165C	MCD4	(putative) involved in cell polarity

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

YNL272C	SEC2	GDP/GTP exchange factor for Sec4p

-351 to -400 nt upstream of the ATG start codon
15 elements found in 13 genes

```
YAR003W		beta transducin domain
```

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

YDR297W	SUR2	Syringomycin response protein 2

YFL008W	SMC1	omosome segregation protein

```
YHR039C		Aldehyde dehydrogenases
```

YKL042W	SPC42	component of the spindle pole body

YLR032W	RAD5	putative ATPase/DNA helicase

```
YLR286C	CTS1	Endochitinase
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

```
YLR236C		
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-301 to -350 nt upstream of the ATG start codon
8 elements found in 7 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

```
YCL022C		
```

YFL008W	SMC1	omosome segregation protein

```
YHR039C		Aldehyde dehydrogenases
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YLR326W		
```

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

-251 to -300 nt upstream of the ATG start codon
15 elements found in 13 genes

```
YBR070C		involved in osmotolerance
```

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YGL027C	CWH41	glucosidase I
```

YJL074C	SMC3	involved in sister chromatid cohesion

```
YLR183C		
```

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YLR326W		
```

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

```
YOL017W		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL187W	MF(ALPHA)1	mating factor alpha
```

-201 to -250 nt upstream of the ATG start codon
16 elements found in 15 genes

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

```
YCL024W		Ser/Thr protein kinase
```
```
YDL101C	DUN1	protein kinase
```
```
YDR383C		
```
```
YGL027C	CWH41	glucosidase I
```

YIL159W	BNR1	involved in actin filament organization

```
YJL018W		
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YLR233C	EST1	involved in telomere length regulation

```
YLR326W		
```

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

```
YNL262W	POL2	DNA polymerase II
```
```
YOR144C		
```
```
YPL187W	MF(ALPHA)1	mating factor alpha
```

-151 to -200 nt upstream of the ATG start codon
18 elements found in 17 genes

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YBR071W		
```

YKL042W	SPC42	component of the spindle pole body

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR083C		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

```
YNL303W		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR074C	CDC21	Thymidylate synthase
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

YPL241C	CIN2	involved in microtubule function

```
YPL256C	CLN2	G(sub)1 cyclin
```
```
YLR236C		
```

-101 to -150 nt upstream of the ATG start codon
26 elements found in 23 genes

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

YBR073W	RDH54	Putative helicase similar to RAD54

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL156W		
```
```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

YJL173C	RFA3	subunit 3 of replication factor-A

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YKR077W		
```
```
YKR083C		
```

YLR121C	YPS4	GPI-anchored aspartic protease

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YLR381W		
```

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL272C	SEC2	GDP/GTP exchange factor for Sec4p

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

YPL124W	NIP29	spindle pole body associated protein

YPR175W	DPB2	DNA polymerase epsilon, subunit B

```
YLR236C		
```

-51 to -100 nt upstream of the ATG start codon
25 elements found in 23 genes

```
YAR003W		beta transducin domain
```
```
YBR070C		involved in osmotolerance
```

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YCL024W		Ser/Thr protein kinase
```
```
YDL105W	QRI2	
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

```
YGL028C	SCW11	soluble cell wall protein
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YHR039C		Aldehyde dehydrogenases
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YLR286C	CTS1	Endochitinase
```
```
YLR376C		
```

YLR383W	RHC18	involved in recombination repair

```
YMR199W	CLN1	G(sub)1 cyclin
```

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YNL273W	TOF1	Interacts with topoisomerase I

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

YPL124W	NIP29	spindle pole body associated protein

```
YPR120C	CLB5	B-type cyclin
```

-1 to -50 nt upstream of the ATG start codon
33 elements found in 28 genes

```
YCL024W		Ser/Thr protein kinase
```
```
YDL010W		
```

YDR507C	GIN4	putative serine/threonine kinase

```
YGL027C	CWH41	glucosidase I
```
```
YGL028C	SCW11	soluble cell wall protein
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YIL026C	IRR1	involved in cell morphology

YJL074C	SMC3	involved in sister chromatid cohesion

YKL042W	SPC42	component of the spindle pole body

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

YLR103C	CDC45	omosomal DNA replication initiation protein

```
YLR183C		
```

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YLR286C	CTS1	Endochitinase
```
```
YLR381W		
```

YLR383W	RHC18	involved in recombination repair

```
YLR457C	NBP1	Nap1p binding protein
```
```
YML061C	PIF1	5' to 3' DNA helicase
```

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL273W	TOF1	Interacts with topoisomerase I

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL300W		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YPL014W		
```
```
YPL127C	HHO1	histone H1
```

From Table IVb: Position-dependent pentamers: Clustered pentamers TAATAis found in the upstream regions of these late_g1 yeast genes in the following intervals:

From Table IVb: Position-dependent pentamers: Clustered pentamers
TAATA
is found in the upstream regions of these
late_g1
yeast genes in the following intervals: