-551 to -600 nt upstream of the ATG start codon
3 elements found in 3 genes

• YGL028C	SCW11	soluble cell wall protein

• YGL089C	MF(ALPHA)2	alpha mating factor

• YMR199W	CLN1	G(sub)1 cyclin

-501 to -550 nt upstream of the ATG start codon
4 elements found in 4 genes

• YBR070C		involved in osmotolerance

• YDL010W		

• YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

-451 to -500 nt upstream of the ATG start codon
5 elements found in 5 genes

• YDL010W		

• YER070W	RNR1	ribonucleotide reductase

• YFL008W	SMC1	omosome segregation protein

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

• YLR234W	TOP3	DNA Topoisomerase III

-401 to -450 nt upstream of the ATG start codon
4 elements found in 4 genes

• YDL018C	ERP3	p24 protein involved in membrane trafficking

• YDR297W	SUR2	Syringomycin response protein 2

• YJL196C	ELO1	Elongation enzyme 1

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

-351 to -400 nt upstream of the ATG start codon
8 elements found in 8 genes

• YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

• YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

• YGR109C	CLB6	B-type cyclin

• YKL045W	PRI2	p58 polypeptide of DNA primase

• YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

• YNL303W		

• YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

• YCL061C		

-301 to -350 nt upstream of the ATG start codon
5 elements found in 5 genes

• YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

• YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

• YKR077W		

• YLR234W	TOP3	DNA Topoisomerase III

-251 to -300 nt upstream of the ATG start codon
8 elements found in 7 genes

• YDL227C	HO	Homothallic switching endonuclease

• YDR507C	GIN4	putative serine/threonine kinase

• YLR326W		

• YMR179W	SPT21	non-specific DNA binding protein

• YOR317W	FAA1	long chain fatty acyl:CoA synthetase

• YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

• YPL208W		

-201 to -250 nt upstream of the ATG start codon
10 elements found in 9 genes

• YDL119C		

• YGR109C	CLB6	B-type cyclin

• YML061C	PIF1	5' to 3' DNA helicase

• YMR179W	SPT21	non-specific DNA binding protein

• YNL102W	POL1	DNA polymerase I alpha subunit, p180

• YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

• YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

• YPR120C	CLB5	B-type cyclin

• YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-151 to -200 nt upstream of the ATG start codon
13 elements found in 13 genes

• YDL101C	DUN1	protein kinase

• YDL156W		

• YGR152C	RSR1	GTP-binding protein, ras superfamily

• YHR154W	ESC4	involved in silencing

• YJL181W		

• YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

• YKR077W		

• YNL272C	SEC2	GDP/GTP exchange factor for Sec4p

• YNL273W	TOF1	Interacts with topoisomerase I

• YOL017W		

• YOR074C	CDC21	Thymidylate synthase

• YPL127C	HHO1	histone H1

• YPL209C	IPL1	Protein kinase

-101 to -150 nt upstream of the ATG start codon
24 elements found in 21 genes

• YBR073W	RDH54	Putative helicase similar to RAD54

• YCL022C		

• YDL010W		

• YDL018C	ERP3	p24 protein involved in membrane trafficking

• YDL105W	QRI2	

• YDL227C	HO	Homothallic switching endonuclease

• YHR110W	ERP5	p24 protein involved in membrane trafficking

• YJL074C	SMC3	involved in sister chromatid cohesion

• YKL042W	SPC42	component of the spindle pole body

• YLL002W	KIM2	diepoxybutane and mitomycin C resistance

• YLR103C	CDC45	omosomal DNA replication initiation protein

• YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

• YLR233C	EST1	involved in telomere length regulation

• YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

• YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

• YNL273W	TOF1	Interacts with topoisomerase I

• YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

• YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

• YOR074C	CDC21	Thymidylate synthase

• YPL267W		

• YPR175W	DPB2	DNA polymerase epsilon, subunit B

-51 to -100 nt upstream of the ATG start codon
8 elements found in 8 genes

• YDL164C	CDC9	DNA ligase

• YDR493W		

• YGR109C	CLB6	B-type cyclin

• YHR113W		Vacuolar aminopeptidase

• YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

• YLL022C	HIF1	interacts with histone acetyltransferase

• YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

• YLR349W		

-1 to -50 nt upstream of the ATG start codon
1 elements found in 1 genes

• YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins