Positioning of CAGCC/GGCTG

From Table IVa: Position-dependent pentamers: Clustered pentamers
CAGCC and/or GGCTG
are found in the upstream regions of these
g2
yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
0 elements found in 0 genes

-501 to -550 nt upstream of the ATG start codon
5 elements found in 5 genes

```
YCR086W		
```

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

```
YKL048C	ELM1	protein kinase
```
```
YKL052C		
```
```
YMR299C		
```

-451 to -500 nt upstream of the ATG start codon
9 elements found in 9 genes

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

```
YBR038W	CHS2	chitin synthase 2
```

YBR104W	YMC2	mitochondrial carrier protein

```
YDR324C		
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

```
YLR015W		
```
```
YNR009W		
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

YOR274W	MOD5	transfer RNA isopentenyl transferase

-401 to -450 nt upstream of the ATG start codon
4 elements found in 4 genes

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

```
YLR015W		
```
```
YOR073W		
```

-351 to -400 nt upstream of the ATG start codon
5 elements found in 4 genes

```
YDR324C		
```
```
YGL101W		
```

YJR112W	NNF1	involved in nuclear function

```
YKL052C		
```

-301 to -350 nt upstream of the ATG start codon
4 elements found in 4 genes

```
YCR085W		
```
```
YDR324C		
```
```
YDR366C		
```
```
YGL101W		
```

-251 to -300 nt upstream of the ATG start codon
1 elements found in 1 genes

```
YMR299C		
```

-201 to -250 nt upstream of the ATG start codon
1 elements found in 1 genes

```
YDR451C		
```

-151 to -200 nt upstream of the ATG start codon
3 elements found in 3 genes

```
YBL032W		
```

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

```
YMR003W		
```

-101 to -150 nt upstream of the ATG start codon
0 elements found in 0 genes

-51 to -100 nt upstream of the ATG start codon
5 elements found in 5 genes

```
YDR451C		
```

YGL255W	ZRT1	high-affinity zinc transport protein

```
YNR009W		
```

YOR188W	MSB1	involved in polarized growth

YOR274W	MOD5	transfer RNA isopentenyl transferase

-1 to -50 nt upstream of the ATG start codon
2 elements found in 2 genes

YCL014W	BUD3	involved in bud site selection

```
YCR085W		
```

From Table IVa: Position-dependent pentamers: Clustered pentamers
CAGCC and/or GGCTG
are found in the upstream regions of these
late_g1
yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
13 elements found in 13 genes

```
YDL010W		
```
```
YDL164C	CDC9	DNA ligase
```

YDR507C	GIN4	putative serine/threonine kinase

```
YGL028C	SCW11	soluble cell wall protein
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YHR039C		Aldehyde dehydrogenases
```

YJL074C	SMC3	involved in sister chromatid cohesion

YKL042W	SPC42	component of the spindle pole body

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YLR457C	NBP1	Nap1p binding protein
```

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

```
YPL127C	HHO1	histone H1
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

-501 to -550 nt upstream of the ATG start codon
10 elements found in 9 genes

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YDL119C		
```
```
YDR493W		
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YIL159W	BNR1	involved in actin filament organization

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR286C	CTS1	Endochitinase
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-451 to -500 nt upstream of the ATG start codon
11 elements found in 10 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YGR041W	BUD9	involved in bud-site selection

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

```
YHR039C		Aldehyde dehydrogenases
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YLR233C	EST1	involved in telomere length regulation

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

```
YMR199W	CLN1	G(sub)1 cyclin
```

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

```
YPL209C	IPL1	Protein kinase
```

-401 to -450 nt upstream of the ATG start codon
5 elements found in 5 genes

YJL074C	SMC3	involved in sister chromatid cohesion

```
YJL181W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```
```
YLR183C		
```
```
YML061C	PIF1	5' to 3' DNA helicase
```

-351 to -400 nt upstream of the ATG start codon
7 elements found in 7 genes

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YJL018W		
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YLR381W		
```

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

-301 to -350 nt upstream of the ATG start codon
5 elements found in 5 genes

```
YBR070C		involved in osmotolerance
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YHR153C	SPO16	sporulation protein
```

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YPR174C		
```

-251 to -300 nt upstream of the ATG start codon
9 elements found in 9 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

```
YDL010W		
```
```
YDR013W		
```

YIL026C	IRR1	involved in cell morphology

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPL124W	NIP29	spindle pole body associated protein

```
YPL256C	CLN2	G(sub)1 cyclin
```
```
YLR349W		
```

-201 to -250 nt upstream of the ATG start codon
5 elements found in 5 genes

```
YDL164C	CDC9	DNA ligase
```
```
YHR039C		Aldehyde dehydrogenases
```

YJL173C	RFA3	subunit 3 of replication factor-A

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

-151 to -200 nt upstream of the ATG start codon
3 elements found in 3 genes

```
YBR071W		
```
```
YDL164C	CDC9	DNA ligase
```
```
YLR457C	NBP1	Nap1p binding protein
```

-101 to -150 nt upstream of the ATG start codon
5 elements found in 5 genes

```
YGL027C	CWH41	glucosidase I
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YLR032W	RAD5	putative ATPase/DNA helicase

YLR121C	YPS4	GPI-anchored aspartic protease

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

-51 to -100 nt upstream of the ATG start codon
0 elements found in 0 genes

-1 to -50 nt upstream of the ATG start codon
1 elements found in 1 genes

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

From Table IVa: Position-dependent pentamers: Clustered pentamers CAGCC and/or GGCTG are found in the upstream regions of these g2 yeast genes in the following intervals:

From Table IVa: Position-dependent pentamers: Clustered pentamers CAGCC and/or GGCTG are found in the upstream regions of these late_g1 yeast genes in the following intervals:

From Table IVa: Position-dependent pentamers: Clustered pentamers
CAGCC and/or GGCTG
are found in the upstream regions of these
g2
yeast genes in the following intervals:

From Table IVa: Position-dependent pentamers: Clustered pentamers
CAGCC and/or GGCTG
are found in the upstream regions of these
late_g1
yeast genes in the following intervals: