Positioning of ACGCG/CGCGT

From Table IVa: Position-dependent pentamers: Clustered pentamers
ACGCG and/or CGCGT
are found in the upstream regions of these
late_g1
yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
5 elements found in 5 genes

```
YDL127W	PCL2	G1 cyclin
```
```
YGL028C	SCW11	soluble cell wall protein
```
```
YHR113W		Vacuolar aminopeptidase
```
```
YLR381W		
```
```
YMR199W	CLN1	G(sub)1 cyclin
```

-501 to -550 nt upstream of the ATG start codon
9 elements found in 5 genes

```
YHR154W	ESC4	involved in silencing
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YLL022C	HIF1	interacts with histone acetyltransferase

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

```
YPL256C	CLN2	G(sub)1 cyclin
```

-451 to -500 nt upstream of the ATG start codon
7 elements found in 4 genes

```
YDL010W		
```
```
YER070W	RNR1	ribonucleotide reductase
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YML027W	YOX1	Homeobox-domain containing protein

-401 to -450 nt upstream of the ATG start codon
16 elements found in 10 genes

YDR297W	SUR2	Syringomycin response protein 2

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

```
YLR326W		
```

YML027W	YOX1	Homeobox-domain containing protein

```
YNL300W		
```
```
YPR120C	CLB5	B-type cyclin
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

-351 to -400 nt upstream of the ATG start codon
20 elements found in 10 genes

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL127W	PCL2	G1 cyclin
```

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YPR120C	CLB5	B-type cyclin
```

-301 to -350 nt upstream of the ATG start codon
14 elements found in 11 genes

```
YBR071W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDR297W	SUR2	Syringomycin response protein 2

YDR507C	GIN4	putative serine/threonine kinase

```
YER070W	RNR1	ribonucleotide reductase
```
```
YJL187C	SWE1	protein kinase homolog
```
```
YJL196C	ELO1	Elongation enzyme 1
```
```
YKR077W		
```

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YPR120C	CLB5	B-type cyclin
```

-251 to -300 nt upstream of the ATG start codon
20 elements found in 11 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

```
YBR071W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDR507C	GIN4	putative serine/threonine kinase

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YJL187C	SWE1	protein kinase homolog
```

YMR179W	SPT21	non-specific DNA binding protein

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

```
YPL014W		
```

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

-201 to -250 nt upstream of the ATG start codon
21 elements found in 12 genes

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YDL018C	ERP3	p24 protein involved in membrane trafficking

YKL042W	SPC42	component of the spindle pole body

```
YLR183C		
```
```
YLR381W		
```

YML027W	YOX1	Homeobox-domain containing protein

```
YML061C	PIF1	5' to 3' DNA helicase
```

YMR179W	SPT21	non-specific DNA binding protein

YNL102W	POL1	DNA polymerase I alpha subunit, p180

```
YNL310C		
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

-151 to -200 nt upstream of the ATG start codon
73 elements found in 32 genes

```
YAR003W		beta transducin domain
```

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YBR070C		involved in osmotolerance
```

YBR073W	RDH54	Putative helicase similar to RAD54

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YCL024W		Ser/Thr protein kinase
```
```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```
```
YDL156W		
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YHR153C	SPO16	sporulation protein
```
```
YHR154W	ESC4	involved in silencing
```
```
YJL181W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLR032W	RAD5	putative ATPase/DNA helicase

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YLR383W	RHC18	involved in recombination repair

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL273W	TOF1	Interacts with topoisomerase I

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YOL017W		
```
```
YOR074C	CDC21	Thymidylate synthase
```
```
YPL127C	HHO1	histone H1
```
```
YPL209C	IPL1	Protein kinase
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-101 to -150 nt upstream of the ATG start codon
84 elements found in 43 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBR073W	RDH54	Putative helicase similar to RAD54

YDL018C	ERP3	p24 protein involved in membrane trafficking

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL105W	QRI2	
```
```
YDL164C	CDC9	DNA ligase
```

YFL008W	SMC1	omosome segregation protein

```
YGL027C	CWH41	glucosidase I
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR153C	SPO16	sporulation protein
```
```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

YIL159W	BNR1	involved in actin filament organization

YJL074C	SMC3	involved in sister chromatid cohesion

YJL173C	RFA3	subunit 3 of replication factor-A

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR083C		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR032W	RAD5	putative ATPase/DNA helicase

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR233C	EST1	involved in telomere length regulation

```
YLR234W	TOP3	DNA Topoisomerase III
```
```
YLR376C		
```
```
YLR381W		
```
```
YLR457C	NBP1	Nap1p binding protein
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

```
YNL262W	POL2	DNA polymerase II
```

YNL273W	TOF1	Interacts with topoisomerase I

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR074C	CDC21	Thymidylate synthase
```
```
YOR144C		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL267W		
```
```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

-51 to -100 nt upstream of the ATG start codon
15 elements found in 10 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YDR013W		
```
```
YDR383C		
```

YJL173C	RFA3	subunit 3 of replication factor-A

YLL022C	HIF1	interacts with histone acetyltransferase

```
YML021C	UNG1	uracil DNA glycosylase
```
```
YPL208W		
```

YPL241C	CIN2	involved in microtubule function

-1 to -50 nt upstream of the ATG start codon
7 elements found in 5 genes

```
YJL181W		
```

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YNL310C		
```
```
YPR120C	CLB5	B-type cyclin
```

From Table IVa: Position-dependent pentamers: Clustered pentamers ACGCG and/or CGCGT are found in the upstream regions of these late_g1 yeast genes in the following intervals:

From Table IVa: Position-dependent pentamers: Clustered pentamers
ACGCG and/or CGCGT
are found in the upstream regions of these
late_g1
yeast genes in the following intervals: