Positioning of AACGC/GCGTT

From Table IVa: Position-dependent pentamers: Clustered pentamers
AACGC and/or GCGTT
are found in the upstream regions of these
late_g1
yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
8 elements found in 8 genes

```
YGL028C	SCW11	soluble cell wall protein
```
```
YGL089C	MF(ALPHA)2	alpha mating factor
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YMR199W	CLN1	G(sub)1 cyclin
```

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

-501 to -550 nt upstream of the ATG start codon
12 elements found in 11 genes

```
YBR070C		involved in osmotolerance
```
```
YDL010W		
```

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YLL022C	HIF1	interacts with histone acetyltransferase

YNL173C	MDG1	Involved in G-protein mediated signal transduction

```
YNL303W		
```
```
YPL256C	CLN2	G(sub)1 cyclin
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-451 to -500 nt upstream of the ATG start codon
8 elements found in 8 genes

```
YDL010W		
```
```
YER070W	RNR1	ribonucleotide reductase
```

YFL008W	SMC1	omosome segregation protein

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YLR234W	TOP3	DNA Topoisomerase III
```

YML027W	YOX1	Homeobox-domain containing protein

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YPR175W	DPB2	DNA polymerase epsilon, subunit B

-401 to -450 nt upstream of the ATG start codon
15 elements found in 13 genes

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL156W		
```

YDR297W	SUR2	Syringomycin response protein 2

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGL089C	MF(ALPHA)2	alpha mating factor
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YNL262W	POL2	DNA polymerase II
```

YNL273W	TOF1	Interacts with topoisomerase I

```
YOR144C		
```
```
YPR120C	CLB5	B-type cyclin
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

-351 to -400 nt upstream of the ATG start codon
13 elements found in 11 genes

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```

YJL074C	SMC3	involved in sister chromatid cohesion

YJL173C	RFA3	subunit 3 of replication factor-A

YKL045W	PRI2	p58 polypeptide of DNA primase

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

```
YNL303W		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YCL061C		
```

-301 to -350 nt upstream of the ATG start codon
15 elements found in 14 genes

```
YAR003W		beta transducin domain
```
```
YBR089W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL119C		
```

YDR507C	GIN4	putative serine/threonine kinase

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

```
YKR077W		
```
```
YLR234W	TOP3	DNA Topoisomerase III
```

YNL273W	TOF1	Interacts with topoisomerase I

```
YPL256C	CLN2	G(sub)1 cyclin
```

-251 to -300 nt upstream of the ATG start codon
12 elements found in 11 genes

YDL227C	HO	Homothallic switching endonuclease

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

YDR507C	GIN4	putative serine/threonine kinase

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YLR326W		
```

YMR179W	SPT21	non-specific DNA binding protein

```
YOR144C		
```

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

```
YPL208W		
```
```
YPL209C	IPL1	Protein kinase
```

-201 to -250 nt upstream of the ATG start codon
18 elements found in 14 genes

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YDL119C		
```
```
YGL027C	CWH41	glucosidase I
```
```
YGR109C	CLB6	B-type cyclin
```
```
YLR183C		
```

YML027W	YOX1	Homeobox-domain containing protein

```
YML061C	PIF1	5' to 3' DNA helicase
```

YMR179W	SPT21	non-specific DNA binding protein

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

```
YPR120C	CLB5	B-type cyclin
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-151 to -200 nt upstream of the ATG start codon
30 elements found in 26 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YCL024W		Ser/Thr protein kinase
```
```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```
```
YDL119C		
```
```
YDL156W		
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YHR154W	ESC4	involved in silencing
```
```
YJL181W		
```

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YLR383W	RHC18	involved in recombination repair

```
YLR457C	NBP1	Nap1p binding protein
```

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL272C	SEC2	GDP/GTP exchange factor for Sec4p

YNL273W	TOF1	Interacts with topoisomerase I

```
YOL017W		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR074C	CDC21	Thymidylate synthase
```
```
YPL127C	HHO1	histone H1
```
```
YPL209C	IPL1	Protein kinase
```

-101 to -150 nt upstream of the ATG start codon
50 elements found in 39 genes

YBR073W	RDH54	Putative helicase similar to RAD54

```
YCL022C		
```
```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL105W	QRI2	
```
```
YDL156W		
```
```
YDL164C	CDC9	DNA ligase
```

YDL227C	HO	Homothallic switching endonuclease

YFL008W	SMC1	omosome segregation protein

```
YHR039C		Aldehyde dehydrogenases
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR153C	SPO16	sporulation protein
```

YIL026C	IRR1	involved in cell morphology

YJL074C	SMC3	involved in sister chromatid cohesion

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL042W	SPC42	component of the spindle pole body

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR077W		
```
```
YKR083C		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR233C	EST1	involved in telomere length regulation

```
YLR234W	TOP3	DNA Topoisomerase III
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

YMR179W	SPT21	non-specific DNA binding protein

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

```
YNL262W	POL2	DNA polymerase II
```

YNL273W	TOF1	Interacts with topoisomerase I

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR074C	CDC21	Thymidylate synthase
```
```
YOR144C		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL267W		
```
```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

-51 to -100 nt upstream of the ATG start codon
19 elements found in 19 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL164C	CDC9	DNA ligase
```
```
YDR013W		
```
```
YDR493W		
```
```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```
```
YHR113W		Vacuolar aminopeptidase
```

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLL022C	HIF1	interacts with histone acetyltransferase

YLR103C	CDC45	omosomal DNA replication initiation protein

```
YML021C	UNG1	uracil DNA glycosylase
```

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

```
YNL310C		
```
```
YPL208W		
```

YPL241C	CIN2	involved in microtubule function

```
YLR349W		
```
```
YCL061C		
```

-1 to -50 nt upstream of the ATG start codon
5 elements found in 5 genes

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

```
YPR120C	CLB5	B-type cyclin
```

From Table IVa: Position-dependent pentamers: Clustered pentamers AACGC and/or GCGTT are found in the upstream regions of these late_g1 yeast genes in the following intervals:

From Table IVa: Position-dependent pentamers: Clustered pentamers
AACGC and/or GCGTT
are found in the upstream regions of these
late_g1
yeast genes in the following intervals: